Gene Information

Name : copR1 (USDA257_c19990)
Accession : YP_006397340.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2100479 - 2101156 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATTCTCGTCATCGAGGACGACCAAAAGACATCGGAATACATTTTGAGGGGCCTGTCCGAAGCGGGTCATGTCTG
CGATGTCATCGAGGACGGTCGTGACGCCCTCTTTCAGGCCAGCCGTGAGCCATACGACGTCATGATCGTCGATCGTATGC
TGCCGGGTCTGGACGGACTTTCCCTGGTCAAGGCGATCCGCGCCGCGAAGGTGAAGACCCCGGTGTTGTTCCTGACAGCG
GTCGGCGGCGTCGACGACCGGGTGGAAGGACTTGAGGCGGGCGGAGACGATTACCTCACCAAGCCCTTCGCCTTCTCGGA
GCTGCTCGCCCGCGTCAACGCACTTTGCCGGCGCCCTCCAGTTCAGGATCAGAAAACGCTTCTTCGTTTTGCCGATCTGG
AAATGGACATTGTCAAGCGACAGGTTCGACGCCGGGGGCAGACAATCGATCTTCAGCCGCGGGAATTCACACTGCTCGAA
GTGCTGATGCGGGCAGAAGGAAGGGTGCTGACGCGGACGATGCTTCTGGAACGCGTGTGGGATTTCCACTTCGACCCAAA
GACCAGCGTCGTCGAAACACATATCAGCCGGCTAAGAGCGAAGATCGACAAGCCCTTCGACATTCCGCTGCTCCACACAG
TGCGCAATACCGGATATCGCCTCGATGCGCGCCGCTAG

Protein sequence : 
MRILVIEDDQKTSEYILRGLSEAGHVCDVIEDGRDALFQASREPYDVMIVDRMLPGLDGLSLVKAIRAAKVKTPVLFLTA
VGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALCRRPPVQDQKTLLRFADLEMDIVKRQVRRRGQTIDLQPREFTLLE
VLMRAEGRVLTRTMLLERVWDFHFDPKTSVVETHISRLRAKIDKPFDIPLLHTVRNTGYRLDARR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-43 49
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-43 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR1 YP_006397340.1 transcriptional activator protein CopR BAC0125 Protein 8e-53 52
copR1 YP_006397340.1 transcriptional activator protein CopR BAC0083 Protein 3e-52 52
copR1 YP_006397340.1 transcriptional activator protein CopR BAC0638 Protein 1e-46 51
copR1 YP_006397340.1 transcriptional activator protein CopR BAC0197 Protein 2e-50 50
copR1 YP_006397340.1 transcriptional activator protein CopR BAC0308 Protein 3e-48 48
copR1 YP_006397340.1 transcriptional activator protein CopR BAC0111 Protein 8e-50 45
copR1 YP_006397340.1 transcriptional activator protein CopR BAC0347 Protein 3e-44 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR1 YP_006397340.1 transcriptional activator protein CopR VFG0596 Protein 5e-44 49
copR1 YP_006397340.1 transcriptional activator protein CopR VFG1389 Protein 3e-32 44
copR1 YP_006397340.1 transcriptional activator protein CopR VFG1390 Protein 2e-38 43