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Name : clpA (BBB_0642) Accession : YP_006394115.1 Strain : Bifidobacterium bifidum BGN4 Genome accession: NC_017999 Putative virulence/resistance : Virulence Product : putative ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 783246 - 785822 bp Length : 2577 bp Strand : + Note : COG0542:ATPases with chaperone activity, ATP-binding subunit DNA sequence : ATGTTCGAACGGTTTACCGACCGTGCACGGCGCGTGATCGTGTTGGCGCAGGAAGAGGCGCGTACTCTCCAGCACAACTA CATCGGCACCGAACACCTGCTGCTCGGCCTGATCCGCGAAGGTGAGGGGGTCGCCGCCAAGGCGCTCGCATCCAAGGGAG TGACCTTGGACGACACCCGCAAGCAGGTCGAGGAGATGATCGGCAAAGGCAATGCCGCCCCCAACGGGCACATTCCCTTT ACTCCGCACGCCAAGCAGGTGTTGGAGCTGAGTCTGCGCGAGGCGCTGCAGCTCGGTCACAGCTATATCGGCACCGAGCA CATCCTGCTCGGCCTGATTCGCGAAGGTGAGGGCGTGGGCACCCAGGTGCTCATCAAGATGGATGTCGACCTGGGCGAAC TGCGTTCGGCCACTATCGACATGATCCATGGCAACAGCGGCGGCGCCAATGCCTCCGGCAAGGGCGATCTGGCCAACGCC GGTGGCGTGCAGGACAAGCGCAGCCAGACCGGTTCGGCCATTCTGGACCAGTTCGGGCGCAACCTGACCGCCGAAGCGGC CGAGGGCAAGCTCGACCCGGTGATCGGGCGCACCAACGAGATCGAACGTGTCATGGTCGTGCTGTCGCGCCGCACGAAGA ACAACCCCGTGCTGATCGGCGAGCCGGGCGTCGGCAAGACCGCCGTCGTCGAAGGCCTCGCGCAGAAGATCAACGCCGGC GACGTGCCGGAGACGCTGAAGGACAAGCAGGTCTATTCGCTGGATCTGGGCTCCATGGTGGCCGGCTCGCGCTACCGCGG CGATTTCGAGGAACGCCTCAAGAAGGTGCTCAAGGAGATCAAGACGCGCGGCGACATCGTGCTGTTCATCGACGAGATTC ACACGATCGTCGGTGCCGGTTCGGCGGACGGCGCCTTGGGCGCGTCTGACATGCTCAAGCCCATGCTGGCTCGCGGTGAG CTCCAGACCATCGGCGCCACCACCACCGACGAGTACCGCAAGTACATCGAGAAGGACGCGGCGCTGGAACGTCGTTTCCA GCCGATTCAGGTGCATGAGCCGACAATCGCGGAGACCATCGAAATCCTCAAGGGCCTGCGCTCGCGCTACGAGAACCACC ACCACGTGACCATCACCGACGGTGCGCTGCAGTCCGCCGCGGAGCTGTCGTCCCGCTACATCCAGGACCGCAACCTGCCC GACAAGGCCATCGACCTGATCGACGAGGCCGGCGCGCGGCTGCGCATCAAGCGCCTGACCGCCCCGCCCGAGCTCAAGGA ACTTGACCAGAAGGTCGCGAAGGTCGCCGCCGAGAAGGACAAGGCCATCAAGGACCAGGACTTCGAGAAGGCCGCCGAGC TGCGCGACAACCAGGAGAAGCTGGAAGCGGAGCGCAAGGAGAAGGAATCCTCCTGGCGCGAGGGCGAGTCCGATGTCGAG ATGGTCGTGAACGAGGATGTGATCGCCCAGGTGATCTCCTCGACCACCGGCATTCCGGTGTTCAAGCTCACCCAGGCCGA GTCGAAGAAGCTGCTCGGCATGGAGTCCGAGCTGCACAAGCGCATCATCGGCCAGGACGAAGCGGTTTCCGCGCTGTCCC GTTCGATTCGCCGCACTCGTGTGGGCCTCAAGGATCCGAAGCGTCCTGCGGGCTCGTTCATCTTCGCCGGCCCGACCGGC GTCGGCAAGACCGAGCTGGCCAAGGCGCTGGCCGAGTTCCTGTTCGACGATGAGGACGCGCTGATTCGCGTGGACATGTC GGAGTTCTCCGAGAAGTATGCGGCATCGCGTCTGTTCGGTGCTCCTCCGGGATACGTCGGTTATGAGGAGGGTGGCGAGC TCACCGAGAAGGTGCGCCGCAAGCCGTTCTCCGTCGTGCTGTTCGACGAGATCGAGAAGGCCCATCCGGACATCTTCAAC ACGCTGCTGCAGGTGCTGGACGACGGTCACCTGACCGATGGTCAGGGACGCAAGGTGGACTTCAAAAACACCATCATCAT CCTGACCACCAACCTGGGTACGCGCGACATCTCCAAGGCCGCCAACACCGGCTTCAACCTTGGCTCGAACGCGGAGTCCA GCTACCAGCGCATGAAGGATCAGGTCAGCTCCGAACTCAAGCAGCAGTTCCGCCCCGAGTTCCTGAACCGTCTTGACGAC ATCATCGTGTTCCGTCAGCTCACCGAGCCGCAGGTGCGTCAGATTGTCGACCTCGACATCAAGCAGCTCAACGACCGTCT GTTCGACCGTCACATGTCGCTGGAGCTCACCCCGGCCGCCAAGGACCTGCTCGCGCAGAAGGGCTTCGACCCGCTGCTCG GTGCTCGTCCGCTGCGCCGCGTGATCCAGCGCGACATCGAGGACGCCATCTCGGAGAAGATCCTGATGGGCGAACTCGAG GACGGTCAGCGCGTGGTGGTCGACTCCGAAGGCGAGGGCATCCTCGGCGAGTTCACCTTCCGCGGCGAACAGTTCGACGA CGCCAAGCCCGAGAACGAGCCGGCTGCGGAGCCGGCAACGGAGGAGTCAGCTGACAAGTCGTCTGACAACGCCGCTCCCG CCTCGCAGGAGGCCTGA Protein sequence : MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVTLDDTRKQVEEMIGKGNAAPNGHIPF TPHAKQVLELSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIHGNSGGANASGKGDLANA GGVQDKRSQTGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKINAG DVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGE LQTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLP DKAIDLIDEAGARLRIKRLTAPPELKELDQKVAKVAAEKDKAIKDQDFEKAAELRDNQEKLEAERKEKESSWREGESDVE MVVNEDVIAQVISSTTGIPVFKLTQAESKKLLGMESELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTG VGKTELAKALAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFN TLLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDISKAANTGFNLGSNAESSYQRMKDQVSSELKQQFRPEFLNRLDD IIVFRQLTEPQVRQIVDLDIKQLNDRLFDRHMSLELTPAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGELE DGQRVVVDSEGEGILGEFTFRGEQFDDAKPENEPAAEPATEESADKSSDNAAPASQEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_006394115.1 | putative ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 0.0 | 57 |
| clpA | YP_006394115.1 | putative ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 2e-136 | 50 |
