Gene Information

Name : YSA_01465 (YSA_01465)
Accession : YP_006384685.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 757033 - 757713 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence :
ATGAAACTGCTGATCGTCGAAGACCAGGCCCGCACCGGCCAGTACCTGAGCCAAGGCCTGAGCGAGGCCGGCTTTGCCAC
CGAGTTGGCTACCGATGGCGAGACCGGCCAGTTCCTCGCCCTGACCGGCGACCACGACCTGCTGATCCTCGACGTGATGC
TGCCTGGCCGCGACGGCTGGCAGATTCTTCAGGCCGTGCGCCAGGCAGGCCTGGATACGCCAGTGCTGTTCCTGACCGCC
CGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAACTGGGCGCCGACGACTACCTGGTCAAGCCGTTCGCCTTTTCCGA
ACTGCTGGCCCGGGTACGCAGCCTGCTGCGCCGTGGCACCAGCCCGAGCCAGGACACGACCCTGAGCCTGGCCGACCTGC
GCCTGGACCTGATCCGACGCCGCGCCGAGCGCGCCGGGCAGCGCATCGACCTGACCGCCAAGGAGTTCTCACTCCTTGAG
CTGCTGCTGCGCCGCCAGGGTGAGGTGCTGCCAAAATCGCTGATCGCCTCGCAGGTGTGGGACATGAACTTCGACAGCGA
CACCAATGTGATCGAAGTGGCCATCCGCCGCCTGCGCCTGAAGATCGACGACCCGCACCCCAACAAGCTGATCCACACCG
TACGCGGCATGGGTTACGTACTCGAAGAGCGCACCGAGTGA

Protein sequence :
MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGWQILQAVRQAGLDTPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGTSPSQDTTLSLADLRLDLIRRRAERAGQRIDLTAKEFSLLE
LLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEERTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-49 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-48 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator BAC0638 Protein 2e-57 70
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator BAC0083 Protein 3e-63 68
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator BAC0197 Protein 6e-59 65
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator BAC0111 Protein 1e-61 63
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator BAC0308 Protein 3e-59 62
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator BAC0125 Protein 2e-57 60
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator BAC0347 Protein 7e-55 60
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator NC_002516.2.879194.p Protein 3e-28 41
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator HE999704.1.gene1528. Protein 3e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator VFG0596 Protein 4e-50 54
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator VFG1390 Protein 2e-34 44
YSA_01465 YP_006384685.1 two component heavy metal response transcriptional regulator VFG1389 Protein 7e-30 43