Gene Information

Name : YSA_10035 (YSA_10035)
Accession : YP_006389335.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5388699 - 5389379 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGCCTCGCGTACTGACCATCGAAGACGACGCCGTCACCGGCCAGGAAATCGTCGCCGAATTGACCAGCCACGGTCTGGA
AGTGGATTGGGCCGACAATGGCCGCGAAGGCCTGGCCAAAGCCATTGCGGGCGGCTACGACCTGATCACCCTGGACCGCA
TGCTGCCCGAGGTCGACGGCCTGACCATCGTCACCACCCTGCGCAACCTCAAGATCGCTACGCCGATCCTGATGATCAGC
GCCCTCTCCGACGTCGATGAGCGGGTGCGCGGCCTGCGTGCAGGCGGGGACGACTACCTGACCAAGCCGTTCGCCTCCGA
CGAAATGGCCGCGCGAGTCGAGGTATTGCTGCGCCGTAACAGCGTACCCACGACTCAGACCCGCTTGCAGGTTGCCGATC
TGCAGCTGGACCTGATCAGCCACGAGGCGCGCCGCGGTGACAACACCCTCAACCTGCTGCCCACCGAGTACAAGCTGCTG
GAGTACCTGATGCGCCACAGCGGCCAGGTGATCACGCGGATGATGATTTTCGAGGAGGTCTGGGGCTATCACTTCGACCC
GGGCACCAACCTGATCGACGTGCACATCGGCCGCCTGCGCAAGAAGATCGACTCACCCGGCCAGTCGCCGCTGATCCGTA
CGGTACGGGGCTCCGGCTATGCCATTGCTGAACCCGTCTAA

Protein sequence : 
MPRVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLTIVTTLRNLKIATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPTTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLL
EYLMRHSGQVITRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator BAC0111 Protein 3e-46 46
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator BAC0347 Protein 1e-41 45
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator BAC0125 Protein 9e-41 44
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-38 43
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-39 42
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator BAC0083 Protein 5e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator VFG0596 Protein 5e-34 42
YSA_10035 YP_006389335.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-32 41