Gene Information

Name : YSA_09735 (YSA_09735)
Accession : YP_006389167.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Resistance
Product : arsenical pump membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5233982 - 5235265 bp
Length : 1284 bp
Strand : -
Note : -

DNA sequence : 
ATGCTGCCCGCCATTGCTGTCTTCGTCTTCACCCTCATACTGGTCATCTGGCAGCCCAAAGGGCTCGGTGTTGGCTGGAG
CGCCGCGCTAGGCGCCATCATCGCCCTGGCTACAGGCGCCGTTTCGCTGCATGACATCCCTGCCGTATGGGCCATTGTCT
GGAACGCCACCGCCACGTTCATCGCGGTCATCATCATCAGCTTGCTGCTGGATGAGGCAGGTTTCTTCGAATGGGCCGCA
TTGCATGTGGCGCGCTGGGCAAACGGCAGCGGCTACCGCCTGTTCGCCTTCTGCGTACTGCTCGGCGCCGCTGTATCGGC
GCTGTTCGCCAACGACGGTGCGGCGCTGATCCTTACCCCCATCGTCATGTCGATGCTGCTCGCGCTGCGCTTCTCACCTG
CAGCGACACTGGCCTTTGTCATGGCCGCAGGCTTCATTGCCGACACGGCCAGCCTGCCGCTGGTGGTCTCCAACCTGGTC
AATATCGTCTCGGCCGACTACTTCGGCCTGGGCTTCGCCGAATACGCATCGGTGATGGTGCCGGTGAATATCGCCAGCGT
GGCGGCCACCCTGCTGGTGCTGTTTCTGTACTTCCGTCGTGATATCCCCAAGCAGTACGCGCTCGATGCGCTGAAGGCGC
CGAGCGAGGCAATTCATGACCACGCTACCTTCAAAGTCGGTTGGTGGGTGCTGCTGGTGTTGCTTGCAGGCCTGTTCGTA
CTGGAACCTCTGGGCATCCCGATCAGTGCGGTGGCCGCCGTCTGTGCCGCAATCCTCTTTGCCGTGGCCGCTCGCGGTCA
CCGCATCTCAACCCGTCGCGTGCTGCGGGAAGCGCCGTGGCAGGTGGTGATTTTTTCTCTGGGCATGTATCTGGTGGTGT
ACGGCCTGAAGAACGCCGGCCTCACGGACATGCTCACCCACCTGCTGGACAGGCTTGCCGAGCAGGGCCTGTGGAGCGCG
GCCATTGGCACCGGGTTGATCTCCGCGCTGCTGTCCTCAGTCATGAACAACATGCCCAGCGTGCTGATCGGCGCCTTGTC
GATCCAGGCCAGCGGCGCAGAGGGCGTGGTACGTGAGGCGATGATCTACGCCAACGTCATTGGCTGCGACCTCGGCCCGA
AGATCACCCCGATTGGCAGCCTCGCCACACTGCTTTGGCTGCATGTGCTGGCGCGTAAAGGCATGCGCATCTCCTGGGGT
TACTACTTCAAGGTCGGCCTGCTGCTCACGGTACCGGTTTTGCTGATCACCCTTTCTGCTCTGGCACTGCGCCTGAGCCT
CTGA

Protein sequence : 
MLPAIAVFVFTLILVIWQPKGLGVGWSAALGAIIALATGAVSLHDIPAVWAIVWNATATFIAVIIISLLLDEAGFFEWAA
LHVARWANGSGYRLFAFCVLLGAAVSALFANDGAALILTPIVMSMLLALRFSPAATLAFVMAAGFIADTASLPLVVSNLV
NIVSADYFGLGFAEYASVMVPVNIASVAATLLVLFLYFRRDIPKQYALDALKAPSEAIHDHATFKVGWWVLLVLLAGLFV
LEPLGIPISAVAAVCAAILFAVAARGHRISTRRVLREAPWQVVIFSLGMYLVVYGLKNAGLTDMLTHLLDRLAEQGLWSA
AIGTGLISALLSSVMNNMPSVLIGALSIQASGAEGVVREAMIYANVIGCDLGPKITPIGSLATLLWLHVLARKGMRISWG
YYFKVGLLLTVPVLLITLSALALRLSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 2e-124 73
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 1e-96 58
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 5e-94 57
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 3e-97 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_09735 YP_006389167.1 arsenical pump membrane protein BAC0578 Protein 1e-125 74
YSA_09735 YP_006389167.1 arsenical pump membrane protein BAC0576 Protein 2e-125 74
YSA_09735 YP_006389167.1 arsenical pump membrane protein BAC0031 Protein 3e-126 74
YSA_09735 YP_006389167.1 arsenical pump membrane protein BAC0577 Protein 6e-120 72
YSA_09735 YP_006389167.1 arsenical pump membrane protein BAC0574 Protein 4e-97 57
YSA_09735 YP_006389167.1 arsenical pump membrane protein BAC0575 Protein 2e-97 57