Gene Information

Name : YSA_09730 (YSA_09730)
Accession : YP_006389163.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5230731 - 5231393 bp
Length : 663 bp
Strand : +
Note : -

DNA sequence : 
ATGCGGCTGTTGCTGGTTGAGGATGACATTGCACTGGGGGAAGGGATCTGCGATGGCCTGCGCCAGGAGGGGTACACCCT
CGACTGGTTGCGTGACGGTGTCAGTGGCTTGCATGCGCTGCAGCACGAGACCTTCGACCTGCTGATCCTGGACCTTGGAT
TACCCCGTATGGATGGCATTGAGCTACTCAGGCGATTACGCGCCGGCGGCGACAGCTTGCCGGTGCTGATCCTCACCGCG
CGGGATGCCCTCGATGATCGCATTGCCGGCCTGGATGCCGGTGCCGATGACTATCTGGTCAAGCCTTTCGACCTCAACGA
GCTCAAGGCACGCTTGCGTGCCTTGCTGCGGCGCAGCGTCGGGCGCGCCAAGGTACTGATCGAGCATGCCGGGGTCAGCC
TGGACCCGACCACCCAGCAAGTGCATTACAACGGCGTCGACGTTGTGCTCACCCCCAAGGAGTACGTGCTGTTGCATGAG
TTGCTGGCACATCCCGGCAAGGTATTCACGCGTGAGCGCCTCACTCAACTGCTGTATGGCTGGGATGAAGAGCCGGAGAG
CAACACGCTGGAGGTGAACATCTACCATCTGCGCAAGAAGCTGTTCAACGGCCTGATTCGCACGGTGCGCGGCATTGGCT
ATCTGGTCGAGGTCAAGGCATGA

Protein sequence : 
MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPRMDGIELLRRLRAGGDSLPVLILTA
RDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSVGRAKVLIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHE
LLAHPGKVFTRERLTQLLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEVKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-32 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-26 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_09730 YP_006389163.1 two component transcriptional regulator BAC0487 Protein 1e-32 49
YSA_09730 YP_006389163.1 two component transcriptional regulator NC_002516.2.879194.p Protein 2e-27 45
YSA_09730 YP_006389163.1 two component transcriptional regulator BAC0197 Protein 1e-30 43
YSA_09730 YP_006389163.1 two component transcriptional regulator BAC0308 Protein 1e-27 41
YSA_09730 YP_006389163.1 two component transcriptional regulator Y16952.3.orf35.gene. Protein 4e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_09730 YP_006389163.1 two component transcriptional regulator VFG0473 Protein 1e-36 48
YSA_09730 YP_006389163.1 two component transcriptional regulator VFG0596 Protein 3e-27 43
YSA_09730 YP_006389163.1 two component transcriptional regulator VFG1390 Protein 2e-31 42