Gene Information

Name : YSA_08894 (YSA_08894)
Accession : YP_006388692.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Unknown
Product : putative integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4831290 - 4832099 bp
Length : 810 bp
Strand : +
Note : -

DNA sequence : 
GTGTTTGAAGTCACTCGCTCAAGTTACTACGCACATCGTCACAGAAGGCGAACTCCGGACGTTGAACGACTGCGGTTGCG
CAGTCGAGTGAATGAGCTGTTCACGCGAGGTCGAGGTGCGCCCGGCAGCCGTACCATCATGGCAATGATGCAAGAAGAAG
GTGAGCAAATCGGGCGGTTCAAGGTACGCAGCCTGATGCGTGAGCTGGCGTTGATCAGCAAGCAGCCAGGATCACATGCG
TACAAAAAGGCCACAGTGGAGCGGCCAGATATTCCGAATACCTTGAACCGAGCGTTTGATGTCGAAGCGCCAAATCAGGT
CTGGTGTGGAGACATAACTTACGTCTGGGCTCAGGGCAAATGGCACTATCTCGCAGTTGTACTGGATCTCTACGCACGCA
GAGTGGTGGGCTGGGCCTTATCAGAGAAGCCGGATGCAGACTTAGTCGTCAAAGCGCTGGACGTAGCTTACGAACAGCGT
GGAAAGCCTCAAGGACTACTGTTCCACTCCGACCAGGGATCGCAATATGGCAGCCGTCAGTTCCGCCAGAGACTGTGGCG
CTACCGCATACGCCAGAGCATGAGCCGCCGAGGCAACTGTTGGGATAATGCACCGATGGAGCGAGTCTTCCGCAGCTTGA
AATCAGAGTGGATACCGACCACGGGCTACCTGACCGGGCAGCAAGCTCAACGAGACATTGGCCAATACCTAATGGGCCAC
TACAACTGGATCCGGCCTCATCAGTTCAACGATGGACTAGCTCCAGCGAAAGCAGAAGAAAAACTCAAAACCGTGTCCGG
GATAAGTTGA

Protein sequence : 
MFEVTRSSYYAHRHRRRTPDVERLRLRSRVNELFTRGRGAPGSRTIMAMMQEEGEQIGRFKVRSLMRELALISKQPGSHA
YKKATVERPDIPNTLNRAFDVEAPNQVWCGDITYVWAQGKWHYLAVVLDLYARRVVGWALSEKPDADLVVKALDVAYEQR
GKPQGLLFHSDQGSQYGSRQFRQRLWRYRIRQSMSRRGNCWDNAPMERVFRSLKSEWIPTTGYLTGQQAQRDIGQYLMGH
YNWIRPHQFNDGLAPAKAEEKLKTVSGIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 5e-92 75
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 5e-61 58
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 5e-61 58
unnamed AAC31485.1 L0006 Not tested LEE Protein 4e-61 54
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 5e-61 54
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 7e-63 53
Z5089 NP_290241.1 transposase Not tested LEE Protein 9e-63 53
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-62 52
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-62 52
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 2e-65 52
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-68 52
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-68 52
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-68 52
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-68 52
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-68 52
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-68 52
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-68 52
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-68 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_08894 YP_006388692.1 putative integrase VFG1484 Protein 3e-61 58
YSA_08894 YP_006388692.1 putative integrase VFG0785 Protein 4e-63 53
YSA_08894 YP_006388692.1 putative integrase VFG1122 Protein 3e-68 52