Gene Information

Name : YSA_08732 (YSA_08732)
Accession : YP_006388612.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Unknown
Product : DNA topoisomerase III
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4764514 - 4766475 bp
Length : 1962 bp
Strand : -
Note : -

DNA sequence :
ATGCGCCTGTTCCTCTGTGAAAAACCCTCCCAGGCAAAAGACATTGCCAAAGTGCTCGGCGCCAACCGCAAAGGCGACGG
CTGCTGGCAAGGCACCGATATCTGCGTCACCTGGTGCATTGGCCACCTGCTGGAAACCGCCCCGCCCGACAGCTATGACG
AACGTTACAAGCGCTGGAACCTGGCCGACCTGCCGATCATTCCAGACAAGTGGAAGATGCTGGTAAAGCCCAAGACCGCC
AGCCAGTTCAAGGCGGTCAAACGTCTGCTCGGTGAAGCGCGGGAGCTGGTGATTGCCACCGACGCCGACCGCGAAGGCGA
AATGATTGCCCGCGAACTGGTCGAGCACTGCCGCTACCGAGGCCCGGTGCAGCGCCTGTGGCTGTCGGCGCTGGATGACG
CCTCCATCCGCAAGGCCCTGGCGCGCCTGCTGCCAGGCCACGAGACGTTCAACCTGTACCACTCGGCGCTGGGCCGCTCG
CGCGCCGACTGGCTGATCGGCATGAACATGAGCCGGCTGTTCACCTTGCTGGGCCGCCAATCCGGCTACCAGGGTGTGCT
GCCGGTAGGCCGCGTGCAAACGCCGACCTTGCGCCTGGTGGTCGACCGCGACCGCAGCATCGCCAACTTCGTACCGGTGC
CGTTCTGGGCCATCGACGTCCAGCTGGAACACGCCGGCCAACGCTTCAATGCCCAATGGCGTGCCCCCGAAGACGCCTGT
GATGACCAAGGCCGCTGCCTGAAGCAAGACCTGGCACAGCGGGCCGCCACCGACATCGGCCATGCCGGCACTGCCCGAGC
GGTAAAGGTAGCGACCGAGCGTGTGCGCGAAGCAGCACCGCTGCCCTTCGACCTTGGCACCCTGCAGGAGCTGTGCTCGA
AAAAGTTCGGCCTCGGCGCCCAGGAAACCCTCGACATTGCCCAGGCACTGTACGAAACACACAAGCTGATCACCTACCCG
CGCAGCGATTGCGGCTATTTGCCACAAAGCCAGCACGCCGAGGCACCCGCCATCCTCGCCGCCCTGCAACGGGCCGATGC
CAGCCTGGCACCGCTGCAGCCCTACCTGGAGCCGCAACGCCGCTCGCGGGCGTGGAACGACGCCAAAGTCAGCGCTCACC
ATGGCATCATCCCCACGGCCGCCGCCAGCGACCCCTCGCGCCTGCCGGCCAAGCACAAGGCCGTGTATACCCTGATCCGC
GCCCGCTATCTGGCGCAGTTCCTGCCCAACCATGAGTACGACCGCACCCAGGCCGACTTCGACTGCGCCGGTCATGCGCT
GCGTGCTGTGGGCAAGCAGATCGTCGAGCCGGGCTGGCGCCGCGCCTTGCCCGAGGCGCTCACCCCGGCCAAAGGCCGCG
AGGCACCACCGGCCCAGGTGCTGCCGGCGCTTCGCGAAGGCCAGGACTGCAACGTAAACGGCCTGCAACTGAAAGACCTG
TGGACCCAGCCACCCAAACCGTTTACCGAAGGCGACCTGATCAAGGCGATGAAAAACGTGGCCAAGCTGGTGGATGACCC
TCGGCTGAAGCAGAAACTCAAGGAAACCACCGGCATCGGCACCGAGGCCACCCGCGCCAGCATTATCCAGGGTCTGCTCG
ACCGCGGTTACCTGGTAAAGAACGGCAAGGCGCTGTCGGCCACACCTGCGGCCTTCAGCCTGATCGACGCCGTTCCCCGC
GCCATTGCCGACCCCGGCACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAAAGCGGCGAGATGCCCCTGGAAGA
GTTCGTCGCCCGGCAATCAGCGTGGATGGGCAAGCTGGTCGAGCGTTGCAGCGGCATGCGCATGACCATCAGCGGGCCAG
CGGCCGGGGCGGCCCCGCCCTGGAAGAAGAAACGTCGCGGTGGAGGTGGGAAAAGCAAAGCGGCCGGAAACAAGGCAACT
CCGAGCAAGCCACGGCAGCCGCGGAAAAAGGCAACGTCCTGA

Protein sequence :
MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWNLADLPIIPDKWKMLVKPKTA
SQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRS
RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC
DDQGRCLKQDLAQRAATDIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYP
RSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIR
ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVNGLQLKDL
WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR
AIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKLVERCSGMRMTISGPAAGAAPPWKKKRRGGGGKSKAAGNKAT
PSKPRQPRKKATS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
topB AAN62317.1 putative DNA topoisomerase III Not tested PAGI-3(SG) Protein 0.0 65
topB AAN62194.1 putative DNA topoisomerase III Not tested PAGI-2(C) Protein 0.0 63
pph56 CAI36097.1 Topoisomerase IA Not tested PPHGI-1 Protein 0.0 63
topB1 YP_005176228.1 DNA topoisomerase III Not tested ICEPmu1 Protein 4e-151 51
topB NP_458624.1 topoisomerase B Not tested SPI-7 Protein 3e-151 49
topB NP_807836.1 DNA topoisomerase III Not tested SPI-7 Protein 3e-151 49
topB AAF14809.1 topoisomerase B Not tested SPI-7 Protein 2e-151 49
PMI2630 YP_002152332.1 DNA topoisomerase III Not tested Not named Protein 3e-150 49
topB AAW83109.1 TopB Not tested GGI Protein 5e-119 43