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Name : YSA_08568 (YSA_08568) Accession : YP_006388513.1 Strain : Pseudomonas putida ND6 Genome accession: NC_017986 Putative virulence/resistance : Virulence Product : Lysine decarboxylase Function : - COG functional category : - COG ID : - EC number : - Position : 4661215 - 4663497 bp Length : 2283 bp Strand : + Note : - DNA sequence : ATGGACGCCATGTCCTTCGGAGGTAGCCACCTGATGTACAAGGACCTCAAGTTCCCGATCCTCATCGTCCACCGCGCCAT CAAGGCCGACAGTGTTGCTGGCGAGCGTGTGCGCGGCATCGCCGAGGAATTGCGCCAGGATGGCTTTGCCATTCTCGCCG CCGCTGACCACGCCGAAGCGCGCCTGGTCGCTGCCACCCACCACGGTCTGGCCTGCATGCTCATCGCGGCTGAAGGCGCT GGCGAGAACACCCATCTGCTGCAGAACATGGCTGAGCTGATTGGCCTGGCCCGCCTGCGTGCACCCAACCTGCCGATCTT CGCCCTGGGCGAGCAGGTGACCCTGGAAAATGCTCCCGCCGAAGCCATGAGCGAGCTCAACCAGCTGCGTGGCATCCTTT ACCTGTTCGAAGACACCGTGCCGTTTCTCGCCCGCCAGGTGGCGCGTGCTGCACACACCTACCTCGACGGCCTGCTGCCG CCGTTCTTCAAGGCGCTGGTGCAGCACACCGCGCAGTCCAACTATTCCTGGCACACCCCAGGCCATGGTGGCGGTGTGGC CTATCATAAAAGCCCGGTAGGCCAAGCCTTTCACCAGTTCTTTGGGGAAAATACCCTGCGCTCGGACCTGTCCGTTTCCG TGCCGGAGCTGGGTTCGCTGCTCGACCACACAGGCCCGCTGGCCGAAGCCGAGGCCAGGGCGGCGCGCAACTTCGGCGCC GACCACACCTTCTTCGTCATCAATGGTACCTCCACGGCCAACAAGATCGTCTGGCACGCCATGGTCGGTCGTGACGACCT GGTGCTGGTGGACCGCAACTGCCACAAGTCGGTGGTGCACGCGATCATCATGACGGGTGCCATCCCGCTGTACCTGTGCC CGGAGCGCAACGAACTGGGCATCATCGGCCCGATCCCGCTCAGCGAGTTCAGTCCCGAGGCGATCGCCGCGAAGATTCAG GCCAACCCCCTTGCCCGTGATCGTGGCCAGCGTATCAAGCTGGCGGTAGTGACCAACTCCACCTACGACGGGCTGTGTTA CCACGCCGGGCTGATCAAGCAGGCCCTGGGTGCCAGTGTCGAGGTGCTGCACTTCGACGAGGCCTGGTTTGCCTATGCTG CGTTCCACGACTTTTTCACCGGGCGCTACGCCATGGGCACCGCCTGCGCGGCAGACAGCCCGCTGGTGTTCAGTACCCAT TCCACCCACAAGCTGCTCGCGGCGTTCAGCCAGGCTTCGATGATTCATGTGCAGGACGGGGCCAGGCGGCAGCTGGACCG GGACCGTTTCAACGAAGCGTTCATGATGCACATCTCTACCTCGCCGCAGTACAGCATTCTCGCCTCGCTGGATGTGGCTT CGGCGATGATGGAAGGGCCGGCCGGGCGCTCGCTGCTGCAGGAGATGTTCGACGAGGCGTTGAGTTTTCGTCGTGCCCTG GCCAACCTGCGTGAGCACATTGCCGCAGAGGACTGGTGGTTCAGCATCTGGCAGCCGCCCAGTGCCGAGGGCATCCCCCG TCTGGCCGCGCAGGACTGGTTGTTGCAGCCGGGGGCGCAATGGCATGGTTTTGGTGAAGTGGCGGCCGACTACGTGCTGC TCGACCCGCTGAAAGTGACTTTGGTGATGCCGGGCCTGAGCGCTGATGGTGTGCTGGGCGTGCACGGCATCCCGGCGGCA GTCGTCAGCAAGTTTCTCTGGGAGCGCGGGCTGGTGGTGGAAAAAACCGGCCTGTACAGCTTCCTGGTGCTGTTTTCCAT GGGCATCACCAAGGGCAAGTGGAGCACCTTGCTCACCGAACTGCTGGAGTTCAAGCGCCACTATGACGGCAACACCCCAC TCAGCAGCTGCCTGCCCAGTGTGGGGGCTGCCGACGCCTTGCGCTACCAGGGCATGGGCCTGCGCGACCTGTGCGACCAG TTACATGACTGCTACCGCGCCAATGCCACGGCCAAGCAGCTGAAGCGGCTGTTCACCCGTTTGCCGGAGGTGGCCGTAAG CCCGGCCCAGGCCTATGACAAGATGGTGCGTGGCGAAGTGGAGGCGGTGCCGATCGAGGCACTACTGGGGCGTGTGGCGG CGGTGATGCTGGTGCCGTACCCGCCTGGCATCCCGTTGATCATGCCAGGTGAGCGGTTCACCGAGGCGACCCGCTCGATT CTGGACTACCTGGCATTCGCCCGAGCATTCAACCAGGGTTTTCCGGGGTTCGTCGCCGATGTGCACGGCCTGCAGCACGA AGGGGGCCGCTACACCGTGGACTGCATCACGGAATGCGCGTGA Protein sequence : MDAMSFGGSHLMYKDLKFPILIVHRAIKADSVAGERVRGIAEELRQDGFAILAAADHAEARLVAATHHGLACMLIAAEGA GENTHLLQNMAELIGLARLRAPNLPIFALGEQVTLENAPAEAMSELNQLRGILYLFEDTVPFLARQVARAAHTYLDGLLP PFFKALVQHTAQSNYSWHTPGHGGGVAYHKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGA DHTFFVINGTSTANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSPEAIAAKIQ ANPLARDRGQRIKLAVVTNSTYDGLCYHAGLIKQALGASVEVLHFDEAWFAYAAFHDFFTGRYAMGTACAADSPLVFSTH STHKLLAAFSQASMIHVQDGARRQLDRDRFNEAFMMHISTSPQYSILASLDVASAMMEGPAGRSLLQEMFDEALSFRRAL ANLREHIAAEDWWFSIWQPPSAEGIPRLAAQDWLLQPGAQWHGFGEVAADYVLLDPLKVTLVMPGLSADGVLGVHGIPAA VVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGNTPLSSCLPSVGAADALRYQGMGLRDLCDQ LHDCYRANATAKQLKRLFTRLPEVAVSPAQAYDKMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSI LDYLAFARAFNQGFPGFVADVHGLQHEGGRYTVDCITECA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 3e-127 | 42 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 3e-125 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YSA_08568 | YP_006388513.1 | Lysine decarboxylase | VFG1670 | Protein | 2e-127 | 42 |
