Gene Information

Name : YSA_08388 (YSA_08388)
Accession : YP_006388421.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4526389 - 4527072 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGCACGTTCTGCTCTGCGAGGACGACGACCTGATCGCCGCCGGCATCTGCGCCGGCCTCACCGCTCAGGGCCTGACCGT
GGACCGGGTTGGCAACGCCGCCGCTGCGCGAGCGATGCTGCAGGCCGCGCAGTTCGACGTGATGATCCTCGACCTCGGCC
TGCCCGACGAAGATGGCCTCAAGCTGCTGCGCCGCCTGCGCGAAAAAGGCGAGACCCTGCCGGTACTGGTGCTCACCGCC
CGCGATGCCGTCACTGATCGTGTCGATGGCCTGCAGGCCGGTGCCGACGATTACCTGCTCAAGCCCTTCGATCTGCGCGA
GCTGGCCGCACGCCTGCATACCTTGCTGCGGCGGGTGGCCGGGCGGGCGGTGAACGTGATCGAGCACGGCCCGCTGCGCT
ATGACCCGAGTAGCTGCGAGGCGACCTTGGCCGGCCAGCATGTCGACCTGTCCCGCCGTGAGCAGGCCCTGCTCCAGGCG
CTGCTGCAGAACCCCGGGCGCGTGCTGTCCAGCGAGCAACTGAAGGACTGCGTATATGGTTTCAGCGACGAGGTCGAGAG
CAACGCCCTGAATGTGCACATCCACCACCTGCGTCGCAAGCTGGGTAACGGCATTGTCGAGACCGTGCGTGGCCTGGGCT
ACCGGCTGGGCCCGGCGCAGGCACCGCAAGAGGCCGCATCATGA

Protein sequence : 
MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGLPDEDGLKLLRRLREKGETLPVLVLTA
RDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAGRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQA
LLQNPGRVLSSEQLKDCVYGFSDEVESNALNVHIHHLRRKLGNGIVETVRGLGYRLGPAQAPQEAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-48 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_08388 YP_006388421.1 two component transcriptional regulator BAC0487 Protein 7e-26 43
YSA_08388 YP_006388421.1 two component transcriptional regulator CP000647.1.gene1136. Protein 9e-20 41
YSA_08388 YP_006388421.1 two component transcriptional regulator BAC0530 Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_08388 YP_006388421.1 two component transcriptional regulator VFG1389 Protein 2e-21 44
YSA_08388 YP_006388421.1 two component transcriptional regulator VFG0473 Protein 2e-30 43