Gene Information

Name : YSA_08109 (YSA_08109)
Accession : YP_006388272.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4378898 - 4379653 bp
Length : 756 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCGGCGCGCTGCGTACGTTGTTGACTCTGGCGCTGCTGCTGGCTGCGCCGCTGGCCCTGGCCGCCGACCCGCTGTC
GATTCCGGCCATCACCCTGTCCAACACCCCGGACGGGCAACAGGAATATTCGGTCAGCCTGCAAATCCTGCTGATCATGA
CCGCGCTGAGTTTCATCCCGGCGTTCGTCATTCTGATGACCAGCTTTACCCGCATCATCATCGTGTTTTCGATCTTGCGC
CAGGCCCTGGGCCTGCAGCAGACGCCCTCGAACCAGTTGCTCAACGGCATGGCGCTTTTCCTGACCATGTTCATCATGGC
CCCGGTGTTCGAGCGAGTGAACCAGGATGCCCTGCAGCCGTACCTGAAGGAGCAGATGACTGCCCAGCAGGCGATCGACA
AAGCCCAGGGCCCGCTCAAGGACTTCATGCTGGCGCAAACCCGGCAGAGCGACCTTGACTTGTTCATGCGCCTGTCCAAG
CGCACCGACATCGCCGGCCCCGACCAGGTGCCGCTGACGATCCTGGTGCCGGCATTCGTCACGTCGGAGCTCAAGACCGC
GTTCCAGATCGGGTTCATGATCTTCATCCCGTTCCTGATCATCGACATGGTCGTGGCCAGTGTGCTGATGGCCATGGGTA
TGATGATGCTGTCGCCGCTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTCGTGCTGGTCGACGGCTGGGCGCTGATC
ATGGGCACCCTGGCCAGCAGTTTCGGCGGCGTCTGA

Protein sequence : 
MSGALRTLLTLALLLAAPLALAADPLSIPAITLSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILR
QALGLQQTPSNQLLNGMALFLTMFIMAPVFERVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSK
RTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI
MGTLASSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 8e-32 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 9e-33 41
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-30 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-30 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-30 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-32 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-33 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-32 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 9e-33 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-23 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-89 83
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-66 61
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-65 60
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-61 59
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG0519 Protein 4e-33 41
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-34 41
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-34 41
YSA_08109 YP_006388272.1 flagellar biosynthesis protein FliP VFG0394 Protein 7e-33 41