Gene Information

Name : YSA_00761 (YSA_00761)
Accession : YP_006384305.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 390440 - 390934 bp
Length : 495 bp
Strand : +
Note : -

DNA sequence : 
ATGAACACCGCCTTGAACCTGGTTGACCCGCTCGATTCGGTACTGGCCCAACGCGCCCGTGAGGATGCGCTGATCACCGA
GGCCCTGCAGCTGCTGGACCAACGTCACTTCCAGCGCGGCGAGGTGCTGATAACCCCCGCCGATGCCGCAGCCTACTTGA
AACTGCAACTCGCCCCCTACCACCACGAAGTGTTTGCCCTGCTCTGCCTCGACTCGCGTCACCGTGTGCTGAGCTTCGAC
ATTCTCTTCACCGGCAGCATTGATGGTGCCTCCGTGTATCCACGCCAGGTGGTCATCAAGGCACTCGAACACAATGCCGC
CGCCGTGATCTTCAGCCACAACCACCCCTCCGGCTGCTCGGAACCGAGCGGCGCCGATCGGGTGCTCACCACCCGCCTGA
CCGAGGCTTTGGCCCTGGTCGAGGTATGCGTCCTGGACCACATCATCGTCGGCGAAGGCACTCCGCTTTCGTTGGCCGAG
TACGGCTGGATGTGA

Protein sequence : 
MNTALNLVDPLDSVLAQRAREDALITEALQLLDQRHFQRGEVLITPADAAAYLKLQLAPYHHEVFALLCLDSRHRVLSFD
ILFTGSIDGASVYPRQVVIKALEHNAAAVIFSHNHPSGCSEPSGADRVLTTRLTEALALVEVCVLDHIIVGEGTPLSLAE
YGWM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-33 52
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-33 52
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-33 52
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-30 51
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-32 50
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-22 47
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-22 47
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-22 47
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 1e-21 46
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 1e-25 45
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-22 44
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 4e-21 44
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 1e-21 44
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-22 44
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-21 44
unnamed AAL08475.1 unknown Not tested SRL Protein 7e-22 44
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 3e-21 43
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 3e-22 43
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-21 43
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 5e-22 43
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 5e-22 43
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-21 43
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 1e-21 43
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-21 43
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_00761 YP_006384305.1 DNA repair protein RadC VFG1119 Protein 9e-34 52
YSA_00761 YP_006384305.1 DNA repair protein RadC VFG0660 Protein 7e-23 47
YSA_00761 YP_006384305.1 DNA repair protein RadC VFG1678 Protein 5e-23 44
YSA_00761 YP_006384305.1 DNA repair protein RadC VFG1066 Protein 3e-22 44
YSA_00761 YP_006384305.1 DNA repair protein RadC VFG1528 Protein 7e-22 43
YSA_00761 YP_006384305.1 DNA repair protein RadC VFG1617 Protein 4e-21 43