Gene Information

Name : YSA_06895 (YSA_06895)
Accession : YP_006387600.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3727890 - 3728573 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATTCTTTTGGTTGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGCATGAAAGGCTACACCGT
CGACTGTGCCCAGGATGGCCTGTCCGGGCTGCATTTGGCCGCCACCGAACACTACGACCTGATCGTACTCGACATCATGC
TGCCAGGCATCGATGGCTACACCCTGTGCAAGCGCCTGCGTGAAGATGCCCGCCGTGACACGCCGGTGATCATGCTCACT
GCCCGTGACCAGCTGGACGACCGCCTGCAGGGCTTCCGCTCTGGGGCTGACGACTACCTGCTCAAGCCATTTGCCTTGTC
GGAGCTGGCGGCGCGCATCGAAGCGGTGCTGCGCCGTGCCCAGGGCGGTGGGCGCCGCACCCTCCAGGTGGCTGACCTGA
GCTACGACCTCGATACCCTTGAGGTAACCCGCCAGGGGCGCCTGCTGAAGCTTAACCCGGTCGGCCTCAAGCTGCTGGCG
GTACTGATGCAGAAAAGCCCGCACGTACTGCGCCGCGAGGTGCTGGAAGAAGCCTTGTGGGGCGATGACTGCCCCGATAG
CGACAGCCTGCGCAGCCATGTGCATCAGTTGCGCCAGGTGATCGACAAACCGTTTGAAAAACCGTTGCTGCATACCGTCC
ATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLA
VLMQKSPHVLRREVLEEALWGDDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_06895 YP_006387600.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-35 43
YSA_06895 YP_006387600.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_06895 YP_006387600.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-33 42
YSA_06895 YP_006387600.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-31 41