Gene Information

Name : YSA_06550 (YSA_06550)
Accession : YP_006387415.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3523543 - 3524511 bp
Length : 969 bp
Strand : -
Note : -

DNA sequence : 
ATGCACGACCCTTCCGCCCACCGCAAGCCGCGTATCGCCATCAGCGCCTGCCTGACCGGGCACAGCGTGCGCTACAACGG
CGGCCACAAGGCCTCCGACCTGTGCCGTAAACAACTGGAACAGCACTTCGACTGGCTACCTGTATGTCCGGAAGTGGCAA
TCGGCCTGGGTGTTCCGCGCGACCCGATTCGCCTGGTCGGCAACCCCGAGCAACCCGAAGTGGTCGGCACCCGCGACCCC
GGCAAGGACCTGACCGACCCGCTGCGCACCTATGGCGAGCAGATGGCCAACGAACTTGACGACATCTGCGGCTACATCTT
CATGCAGAAGTCACCTTCTTGCGGCCTGGAACGGGTAAAGGTTTATCAGGACAATGGCCACCCGGCCGTGCATGGTGGGC
GCGGCGTCTATGCCCAGGCTTTCTGTGCATTGCGCCCGGACCTGCCAGTAGAGGAAGAAGGCCGCCTGCATGACCCCGTG
CTGCGCGAGAACTTCATAAGCCGCGTTTACGCCTACGCCGACTGGCAGCGCCTGCTGGCCGAGGGCCTAAACCGTGGCGC
GCTGGTACGCTTTCATTCGCGCTACAAGTATTTGCTGATGGCCAATAACCCCCAGGCCTATCGCACCCTCGGCCGCCTGC
TTGGCAGCATGAGCAAGGCTGATGAACCACAGAGCATCGGCCCGCGCTATTTCAGCCAGCTGATGCAAGCCCTGCGCCGC
TGCGCGAGCCGCGGCACCCACAGTAACGTGCTGCAGCACCTGAGCGGTTACTTCAAGGATGCCCTGACGCAGCAGGACAA
GGCCGAGTTGCAGGCAGTCATCGGCCAATACCAACAAGGCGTGGTACCACTGGTAGTGCCACTGACCTTGCTCAAACACC
ATTTGCGCAAGCACCCAGACCCCTACCTGCAGCAACAAGCCTACCTGCAGCCGCACCCCGAGAGCCTGGGCTTGCGCAAT
GCGGTCTGA

Protein sequence : 
MHDPSAHRKPRIAISACLTGHSVRYNGGHKASDLCRKQLEQHFDWLPVCPEVAIGLGVPRDPIRLVGNPEQPEVVGTRDP
GKDLTDPLRTYGEQMANELDDICGYIFMQKSPSCGLERVKVYQDNGHPAVHGGRGVYAQAFCALRPDLPVEEEGRLHDPV
LRENFISRVYAYADWQRLLAEGLNRGALVRFHSRYKYLLMANNPQAYRTLGRLLGSMSKADEPQSIGPRYFSQLMQALRR
CASRGTHSNVLQHLSGYFKDALTQQDKAELQAVIGQYQQGVVPLVVPLTLLKHHLRKHPDPYLQQQAYLQPHPESLGLRN
AV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 3e-60 43
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 3e-60 43
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 2e-60 43
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 1e-60 43
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 2e-60 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_06550 YP_006387415.1 hypothetical protein VFG0490 Protein 1e-60 43