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Name : YSA_04509 (YSA_04509) Accession : YP_006386330.1 Strain : Pseudomonas putida ND6 Genome accession: NC_017986 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : - COG ID : - EC number : - Position : 2449145 - 2450818 bp Length : 1674 bp Strand : + Note : - DNA sequence : ATGCACACCCCCGACAACCTGGCACTCGACCTCAAGCGCGTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAG CGATACCCTGCAAGTACTCGAACACGCCGCCGCCCACCCCGCTAGCCACCCGCTGGAACACATCGCCGCCTGCAGCCTGG AAAACCGCCAGCACCCTGGTCAGCCTCTGGACCTGGAGTACCTTTGCCAATGGCTGGCCGACAAGGTCGGCCAACCCTAC CTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCGGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCAT CCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAGCCTTTCCAGGATGACTGGCAGGCCGACCTGG CCCGTAGCCTCGGCCGATCGATCCGTCGCGTACTGGCCAGCCCGCAGCAGATCCGTGAGTCAGCGCAGTCGTTCCACCGC CTGGCCCAGTCGGTAAAAGGCGCGCAATACCAGCAGTCGGCCAGCCTGGGGGAACTTGAGCAATTGCTGGAGCTGGGCAA ACGCCAGGCCGAGGCCAGCGCAGACGACGCACACATTGTGCATATCGTCGACTGGCTGCTGCAGTACGCCATTGAGCAAC GCGCCAGCGATATCCACCTGGAACCACGCCGCGAACAGGGCCAGTTGCGCTACCGCATCGATGGCCTGCTGCACACCGTC TATGCCTTCCCCGCCGGGGTCACCCTGGCCCTCGTCAGCCGCCTGAAACACCTGGGCCGCATGGACGTTGCCGAGAAGCG CCGGCCGCAGGACGGCCGGCTGCAAAGCCGCCTGCCCGGTGGTGGCGAGGTGGAGCTGCGGCTTTCGACCCTGCCCACCC CGTTTGGCGAGAAACTGGTGCTGCGCCTGTTCGACCCGCAACAGTTGCAAGAGGGCTTCGAACGCCTTGGCCTGCACGGC CAGCAACTGGCCCAATGGCAGCGCCTGCTACGTCAGCGCCAAGGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAA AACCAGCACGCTGTACACCAGCCTCAAACTGTTGGCCACCCCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGC GCCTGGAGCCAGCCTTCAACCAGCTGCAGGTACAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTG CGCCAAGATCCCGATATCATCATGATCGGCGAAATTCGCGACCGCGAAACCGCCCTGGTGGCAGTTCAGGCAGCGCTGAC TGGGCACCTGGTACTGTCGACCCTGCATACCAACGACGCCTGTGCAGCAATTACCCGCTTGCAAGAGCTGGGTGTGGCCG ACTACCTCATCAAGGCGACGCTTATCGGGGTGATGGCCCAGCGCCTGGTGCGAACCGTCTGCACCGACTGCCAGGCAGGT TCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACAGGATTATTCGAACTACTCGAGCCCAGCGA CACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCCGATTGCGGCAACAGGCACTGGCCGATGGCCTGATTGACC TGCGCCATTGCGGCGAGGCCAAAGTGGCCGCTGGGCAGACCCGTGCCGAGGAAGTGCTGCGCGTCTGCAACTGA Protein sequence : MHTPDNLALDLKRVLQALLADQHLHASDTLQVLEHAAAHPASHPLEHIAACSLENRQHPGQPLDLEYLCQWLADKVGQPY LRIDPMQLDLPQVTGLISPAFAQRHGILIVAADASSVTVASAQPFQDDWQADLARSLGRSIRRVLASPQQIRESAQSFHR LAQSVKGAQYQQSASLGELEQLLELGKRQAEASADDAHIVHIVDWLLQYAIEQRASDIHLEPRREQGQLRYRIDGLLHTV YAFPAGVTLALVSRLKHLGRMDVAEKRRPQDGRLQSRLPGGGEVELRLSTLPTPFGEKLVLRLFDPQQLQEGFERLGLHG QQLAQWQRLLRQRQGIILVTGPTGSGKTSTLYTSLKLLATPQVNLCTIEDPIERLEPAFNQLQVQPALDLGFANAVRAML RQDPDIIMIGEIRDRETALVAVQAALTGHLVLSTLHTNDACAAITRLQELGVADYLIKATLIGVMAQRLVRTVCTDCQAG SSATCRACRGTGFQGRTGLFELLEPSDTLRALIGPDADLTRLRQQALADGLIDLRHCGEAKVAAGQTRAEEVLRVCN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-58 | 47 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-59 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YSA_04509 | YP_006386330.1 | type II secretion system protein E | VFG2048 | Protein | 1e-58 | 47 |
