Gene Information

Name : YSA_04462 (YSA_04462)
Accession : YP_006386302.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : sigma-54 factor interaction domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2421383 - 2422213 bp
Length : 831 bp
Strand : -
Note : -

DNA sequence : 
ATGACGTTTCAAAACCCGTTCGGCCAGCCGCTACTGACCTTCCCCGAGCTGGACAAGAGCCCGCTGAGCATTCGTGCCAA
GGCGCTGGTGTTCATCGACCCGCGCTCGCAGCAGCTGCGCGAGGACCTTGAGCGCCTGGCGCTACAACCTTTGCCAGTGC
TGATCCGTGGCGAAACCGGCACCGGCAAGGAGCTGCTGGCCCGGCAGATTCACCGTACCAGCGACCGTGGAGGGTTGTTC
GTGTCGGTCAACTGCGCGGCCATCAGCCCCACCTACGCCGATGCCGAGCTGTTTGGCTATAGCGCGGGCACCCATGGCGG
TACGGCCAGCAGCCGCGCCGGCTGGTTCGGTTCGGCCAGCGGCGGCACCTTGTACCTGGACGAGATTGCCGACTTGCCGT
TGGCCATCCAGGGCAAGCTGCTGGCGGCCCTGGAAAACCGCGAGGTCACTCGGGTGGGCGCGCAGCAGCCACAGCCGGTG
GATGTGCGCCTGGTAGCCGCCACCAGCATCGACCTGGCCCGTGTAGTACGTGCAGGGCGCTTCAACGAGCGCCTGTACCA
GTATCTGCGCGAGGGCGCGCTGGAGCTGCCGCCGCTGCGCGAGCGGCCGGGCGATATCCTGCCGCTGGCCGAGTACTTCG
TGGGCATCTACAGCGTGCGCCTGCAACGGCCACTGCCCTTGGTGAGCGAGGCGGCGCAGCGGGTGCTGGAGGCGCATTTC
TGGCCGGGCAATACCCGCGAACTGGAGAACGTCATCCACTTTGCCTTGCTGGTCAATGACGGCGAAGAGATCCTGCCAGA
GGATCTCGAACTGCCTGACCCCTCGCGTTAG

Protein sequence : 
MTFQNPFGQPLLTFPELDKSPLSIRAKALVFIDPRSQQLREDLERLALQPLPVLIRGETGTGKELLARQIHRTSDRGGLF
VSVNCAAISPTYADAELFGYSAGTHGGTASSRAGWFGSASGGTLYLDEIADLPLAIQGKLLAALENREVTRVGAQQPQPV
DVRLVAATSIDLARVVRAGRFNERLYQYLREGALELPPLRERPGDILPLAEYFVGIYSVRLQRPLPLVSEAAQRVLEAHF
WPGNTRELENVIHFALLVNDGEEILPEDLELPDPSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS AAA17650.1 positive regulatory factor Not tested Hrp PAI Protein 7e-38 45
hrpS ABQ88367.1 HrpS Virulence Hrp PAI Protein 7e-38 45
hrpS NP_791207.1 type III transcriptional regulator HrpS Virulence Hrp PAI Protein 1e-34 43
hrpS AAC35800.1 transcriptional regulator Virulence Hrp PAI Protein 2e-34 43
hrpS AAC34753.1 HrpS Virulence Hrp PAI Protein 7e-35 43