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Name : YSA_02152 (YSA_02152) Accession : YP_006385049.1 Strain : Pseudomonas putida ND6 Genome accession: NC_017986 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : - COG ID : - EC number : - Position : 1144204 - 1146213 bp Length : 2010 bp Strand : - Note : - DNA sequence : ATGAGCGACGCAAAAAACAGCAGGGTGCGTGATTACCTAGTTAACCTGTCCAGGCGGAAAAAGCGTCTTGTGCAAGTGTG CTCCGACGTGGTGCTGATCTGGTTGGCGTTATGGCTGTCCTTTATCGTGCGCCTGGGCATCGATGAAATGTACAACCCGG TCATCAAGCACGCCTGGTTGTTCGTGGTTGCACCCGTGGTAGCCATTCCGCTGTTCATTCGCTTTGGCATGTACCGGGCG GTGATGCGCTACTTCGGCAATGACGCCTTGGTGACCATCATCAAGGCGGTTACCCTTTCATCGCTCATTCTGGCTGTGGT TGTGTACTGGTACAGCAACCATCAGGTAATCGTGCCGCGCTCGATCATCTTCAACTATTGGTGGTTGAGCATGGTCATCA TTGGTGGTTTACGCCTGATCATGCGCCAGTACTTCCTGGGCGACTGGTTTACTGGTGCCCATCAGATACCCTTTGCCAAC CGCGATGATGGCCTGGTCAAGGTAGCCATCTATGGTGCAGGCACCGCCGGCAACCAGCTGCTGGCAGCATTGCGCATGGG GCGGGCGATGCGCCCGGTGGCATTTATCGATGACGACAGTGACCTTGCCAACCGGGTCATTTCCGGTTTGCAGGTGTACA AGCCCAAGCATCTGCCGCAGATGATCAAGGAAACCGGCGCACAGGAAATCCTCCTCGCCCTGCCTTCTGTTTCGCGCGCC CGGCGCAAGGAAATTCTCGCCTTGCTCGAACCGTACCCGTTGCACGTGCGCAGCGTGCCGTCCTTTGCCGACCTGGCAAG TGGCCGGGTCAAGGTGGACGACATTCAAGACGTGGACATTGCCGATTTGCTTGGGCGTGACCCGGTACCCGCCAAGGAAG GGTTGCTCGAACGCTGCATCCACAAGCAAACGGTGTTGGTCACCGGGGCTGGTGGCTCCATAGGTTCCGAGCTTTGCCGT CAGATCATCGGGCTTGGGCCAACGACCTTGCTGCTGTTCGACCACAGCGAGTACAACCTCTACGCCATCCTCAGCGAGCT GGAGCAACGGGTTGCGCGCGAGTCGCTGTCGGTGCGGCTGCTGCCGATTCTGGGGTCGGTACGCAACCAGCAGCACCTGG CCGACGTAATGTCCACTTGGCGGGTAGCCACTGTGTACCACGCGGCGGCCTATAAACATGTGCCCATGGTTGAGCACAAC ATGGCCGAGGGCATACTGAATAATGTGTTCGGCACGCTGTGTACCGCACAGGCTGCCCTGCAATCAGGCGTCGCCAACTT CGTGCTTATCTCCACGGACAAGGCGGTGCGCCCCACCAACGTGATGGGTGGTACCAAACGTCTATCCGAGTTGATTCTGC AAGCACTAAGCCGCGAGGCGGCTCCCGTCATGTACGGTGACAGCAGCAAGATCGCCCGGGTGAACAATACCCGCTTCACC ATGGTGCGTTTTGGCAATGTGCTGGGCTCCTCTGGCTCGGTGATCCCGTTGTTCCACAAGCAGATCAAGGCCGGTGGCCC GATTACGGTTACCCACCCAAAGATTACCCGCTACTTCATGACTATCCCCGAAGCCGCTCAGCTGGTGGTTCAGGCAGGGG CGATGGGGCAGGGCGGTGACGTATTTGTTCTCGACATGGGGGAACCGGTAAAAATTGTAGAGCTGGCCGAAAAAATGATT CATCTTTCGGGCCTCAGTGTACGTAGCTCAGGCAACCCCAGCGGTGATATCGCTATTGAATTCACGGGGCTGCGCCCAGG TGAAAAGCTTTTTGAAGAATTGTTGATTGGCGATGACGTTTCCCCGACCGTTCACCCGATGATCATGGTAGCGAATGAAG ACTATGTAAGCTGGGACGTCTTGCGTGAGCGTATTACCGTGTTACTGAATGCAGTGGCGGTGGATGACTTTGGCCGTATC CGTCAAATGTTGCGTGAATTAGTGAACGGGTACGTACCGGAAGGGGAAATTGTCGACTGGATCTACCTACAGCAGCGGCA GGACAGTTGA Protein sequence : MSDAKNSRVRDYLVNLSRRKKRLVQVCSDVVLIWLALWLSFIVRLGIDEMYNPVIKHAWLFVVAPVVAIPLFIRFGMYRA VMRYFGNDALVTIIKAVTLSSLILAVVVYWYSNHQVIVPRSIIFNYWWLSMVIIGGLRLIMRQYFLGDWFTGAHQIPFAN RDDGLVKVAIYGAGTAGNQLLAALRMGRAMRPVAFIDDDSDLANRVISGLQVYKPKHLPQMIKETGAQEILLALPSVSRA RRKEILALLEPYPLHVRSVPSFADLASGRVKVDDIQDVDIADLLGRDPVPAKEGLLERCIHKQTVLVTGAGGSIGSELCR QIIGLGPTTLLLFDHSEYNLYAILSELEQRVARESLSVRLLPILGSVRNQQHLADVMSTWRVATVYHAAAYKHVPMVEHN MAEGILNNVFGTLCTAQAALQSGVANFVLISTDKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDSSKIARVNNTRFT MVRFGNVLGSSGSVIPLFHKQIKAGGPITVTHPKITRYFMTIPEAAQLVVQAGAMGQGGDVFVLDMGEPVKIVELAEKMI HLSGLSVRSSGNPSGDIAIEFTGLRPGEKLFEELLIGDDVSPTVHPMIMVANEDYVSWDVLRERITVLLNAVAVDDFGRI RQMLRELVNGYVPEGEIVDWIYLQQRQDS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-82 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YSA_02152 | YP_006385049.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 5e-124 | 46 |
| YSA_02152 | YP_006385049.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 5e-80 | 44 |
