Gene Information

Name : TKWG_20835 (TKWG_20835)
Accession : YP_006380866.1
Strain : Advenella kashmirensis WT001
Genome accession: NC_017964
Putative virulence/resistance : Virulence
Product : TrwI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3580063 - 3581049 bp
Length : 987 bp
Strand : -
Note : COG3704 Type IV secretory pathway, VirB6 components

DNA sequence : 
ATGGCAGGCTTTAATTTTTTCAATCCGCTTTTCGATAAATTCGATTCGCTGACAGCGACTTTTGTCACGGACGTTTCTGC
AAAACTTATTACAACATTGACCCCTGTATTAATGGCTGGTCTTGCGATAAGTTTTATTGTTTATTCATTGGCAATAATAC
GCGGAGTAATAGATACGCCATTAAGTGATTATATTTGGCGTTGCTTCAGAATAGGAGTGATCGTTTCAATTGCTTCAGCG
GGGGGCTTGTATCAATCCGTGATAGCCGATGCAATTGTACATACCCCAGATGACTTGGCGGCAGCATTAGTAGCGGATCC
GGCGTCAACCCATACAGCGGGAAATATTCTGGACGCTGCCGCTGAAAAAGGCTATGACGTTGCCGCAAAAGCATTTGATC
AAGCAAGCTTTTTTAGTGGTGATGGCTTAACTTACATGGCGTTTGGAGTGCTCGCTATTTTAGCCTCCGTTGCTCTTGCT
GGGATTGGCGGGGCTTTCCTAATACTTGCAAAGGTTGCTATAGCTATTCTTGTCGCTTTAGGGCCATTGTTTATATTTGC
GCTGCTGTGGCAGGCAACGCATCGTTTTTTTGAGCTGTGGACCGCTCAGATCTTGAATTACGGATTATTGATTGTGCTTT
GTTCTGCGGTATTTATGCTGCTAATGAAAATGTTTGGCGATTATATGGAAGGGATTCAATTCGATGGCGTAACGAATGTG
GTCTATGCGCTTGGTGGGGCGTGCATGATTTCCGTCGTTTCAGTACTTTTATTACTTCAAATGCCTTCGATCGCGGCCGG
TTTGGCTGGTGGTGCGGGTCTGAGCTATATGTGGGAAATGCGTATGTTACGTGGTGGGGTGGAGGCGGGATTTAGAGCTC
CAGGCGGCGTATATCGCGGTGCTCGCGTAACAGCGAAAGGCATCCAATCGGTCGGCGGTGGAGTTAGGCGTATAGCTGGC
TATGCACGCGGGCGCCTTGCTGCATAA

Protein sequence : 
MAGFNFFNPLFDKFDSLTATFVTDVSAKLITTLTPVLMAGLAISFIVYSLAIIRGVIDTPLSDYIWRCFRIGVIVSIASA
GGLYQSVIADAIVHTPDDLAAALVADPASTHTAGNILDAAAEKGYDVAAKAFDQASFFSGDGLTYMAFGVLAILASVALA
GIGGAFLILAKVAIAILVALGPLFIFALLWQATHRFFELWTAQILNYGLLIVLCSAVFMLLMKMFGDYMEGIQFDGVTNV
VYALGGACMISVVSVLLLLQMPSIAAGLAGGAGLSYMWEMRMLRGGVEAGFRAPGGVYRGARVTAKGIQSVGGGVRRIAG
YARGRLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trwI5 YP_001610489.1 TrwI5 protein Virulence Not named Protein 2e-44 44
trwI4 YP_001610486.1 TrwI4 protein Virulence Not named Protein 2e-44 44
trwI3 YP_001610484.1 TrwI3 protein Virulence Not named Protein 7e-45 44
trwI2 CAD42849.1 TrwI2 protein Not tested trw-PAI Protein 2e-44 44
trwI5 CAD42857.1 TrwI5 protein Not tested trw-PAI Protein 2e-44 44
trwI4 CAD42854.1 TrwI4 protein Not tested trw-PAI Protein 1e-44 44
trwI3 CAD42852.1 TrwI3 protein Not tested trw-PAI Protein 5e-45 44
trwI2 YP_001610481.1 TrwI2 protein Virulence Not named Protein 2e-44 44
trwI1 CAD42846.1 TrwI1 protein Not tested trw-PAI Protein 3e-43 43
trwI1 YP_001610478.1 TrwI1 protein Virulence Not named Protein 5e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TKWG_20835 YP_006380866.1 TrwI VFG2261 Protein 6e-53 48
TKWG_20835 YP_006380866.1 TrwI VFG2264 Protein 2e-53 48