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Name : HMPREF0351_12739 (HMPREF0351_12739) Accession : YP_006377345.1 Strain : Genome accession: NC_017961 Putative virulence/resistance : Unknown Product : RNA-directed DNA polymerase (reverse transcriptase):HNH endonuclease Function : - COG functional category : - COG ID : - EC number : - Position : 26015 - 27925 bp Length : 1911 bp Strand : + Note : - DNA sequence : ATGCCTAAAAATAAAAATGAAACATTGTGTGTAGAAGATTTAAGACACGCTGAATATTACGAAATGCAAAACACCTTTGA TGATTTATATGCCAAAAGTAAGAATGGAGATATTTTCACTCATCTTATGGATATTATCCTATCGAGAGAAAATATATTAC TGGCATATCGAAATATCAAAGCAAATGCAGGCAGTAAAACAGCAGGAACAGACGGTACAATAATTAAAGATATTGGCAAA TTGCCAGCAGAAACAGTTGTCAAAAAAGTAAGATACATTGTTGCAGGCAGTCCACATGGGTATCGACCTAAGCCAGTGAG GCGAAAAGAAATACCAAAACCAAATGGTAAAACCAGACCTCTAGGTATTCCTTGTATGTGGGACAGGCTTATACAACAAT GTATAAAACAAGTATTAGAACCAATCTGCGAAGCTAAATTTAGTGAAAACAGCTATGGTTTTAGACCTAATAGGTCAGTT GAAAATGCAATAAAAGCAACCTATAACCGCCTACAAATCAGCCAGCTACATTATGTGATTGAATTTGATATTAAGGGTTT CTTTGACAACGTGAACCATTCCAAGCTGATAAAACAGATATGGGCTATGGGAATACGGGACAAGCACTTGATATTCATTT TAAAAAGGATATTAAAAGCTCCAATCAAAATGACTAACGGTACAATAACATATCCAGAGAAAGGAACTCCGCAAGGGGGA ATAATATCCCCACTACTAGCAAACATTGTTCTTAATGAGTTAGACCATTGGGTAGAAAGCCAATGGCAGGAAAATCCTGT TACAAAAAACTATGTGGTTCATATCAATAAAAGCGGTAGCCCATGTAAAAGCAACGCTTACAAAGAAATGAAGAAAACAA AGTTAAAGGAAATGTATATGGTTCGTTATGCAGATGATTTTAGAGTTTTCTGCCGCTACAAGGAAAGTGCTGAAAAAGCC AAAATAGCAATCACTCAATGGATTGAACAACGATTAAAATTGGAAGTATCACAAGAAAAAACAAGAATTGTAAATGTTAG AAAAAGATACTCCGACTTTCTTGGTTTCAAGATTAAAATGATACCGAGAAGAAAGAAGTTAGTTGTTAAATCACATATAA GTGATAAACAATTCAAAAACCAAAAAGACAAGCTGGTATCACAGGCAAAGAAAATTGCTTCTCCCTCAAAAGGGAAAACG GAATTAGAAGAAACAAGACTTTATAATTCAATGGTATTAGGTATGCAAAATTATTATCAGATTGCAACGAATGTAAATCT GGATTGTATGAAACTGAATAGAGCTGTAATGGCTATCTTCACTAACAGATTAGGTACAAACAAAAGGGGCAGATTGAGAA AAACAGGCAGACAACTTACGACAAAGGAGGCAACAAGATATGGTAAATCTAAAATGCTTCGGTATGTTGCTGGCGAGGGC GAACCTATTTTCCCTGTTGGATATATCCAACACAGAAAACCAATGGCAAAGGTGTATTTAGCGAATTGCTACACTCTAGA GGGAAGAAAATTTATCCACACCAATCTAAGTGTTGATAAATTACTGATGTACCAGTTAATGAAATTATCTTTGGAAAATC GCACAATAGAATACGCAGACAATCGAATTTCGCTATTTTCTGCTCAACATGGAAAATGTGCTATAACTCTGGAAGAATTT CAACAAGCTAATGAAATACATTGTCATCATATTGTACCAACTGGAGCTGGTGGAAATGACGATTATAAAAATCTTATTTT GGTAAAAGAGGCGGTACACCGTCTAATACACGCTAAAACAGAAGAAACAATACAAAAATATATAGCTCTATTGAAGCTAA ATAAAGTCCAGCTCATAAGACTAAATAAATATAGAGTATTAGCTGGCAATCAAGAATTAAACTTGATATAG Protein sequence : MPKNKNETLCVEDLRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGTIIKDIGK LPAETVVKKVRYIVAGSPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQCIKQVLEPICEAKFSENSYGFRPNRSV ENAIKATYNRLQISQLHYVIEFDIKGFFDNVNHSKLIKQIWAMGIRDKHLIFILKRILKAPIKMTNGTITYPEKGTPQGG IISPLLANIVLNELDHWVESQWQENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRYKESAEKA KIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHISDKQFKNQKDKLVSQAKKIASPSKGKT ELEETRLYNSMVLGMQNYYQIATNVNLDCMKLNRAVMAIFTNRLGTNKRGRLRKTGRQLTTKEATRYGKSKMLRYVAGEG EPIFPVGYIQHRKPMAKVYLANCYTLEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHGKCAITLEEF QQANEIHCHHIVPTGAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALLKLNKVQLIRLNKYRVLAGNQELNLI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2326 | NP_815981.1 | group II intron reverse transcriptase maturase | Not tested | Not named | Protein | 5e-143 | 50 |
| ef0012 | AAM75218.1 | EF0012 | Not tested | Not named | Protein | 1e-98 | 41 |
