Gene Information

Name : fliP (TMO_1116)
Accession : YP_006370539.1
Strain : Tistrella mobilis KA081020-065
Genome accession: NC_017956
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1228724 - 1229494 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence :
GTGAAGCAGGGCGTGCGGCACAAGACCGCACAGCTTGCCGGAGTTCTGATCCTGTTCCTGCTGGCGGCCCTGGCCGGCAG
TCATCCGGCTTTTGCCCAGTCGGTCACCGTCGATCTGGGGGCCGAGGATCCGGGCGGCTTCACCGGCCGGATCGTTCAGC
TCGTCACCCTGGTCACCGTGCTGTCGCTGGCACCGGGGCTGCTGGTGGCGGTGACGTCTTTCACCCGGATCGTGGTGGTG
CTGTCGCTTCTGCGCAGCGCGCTGGGCGTGCAACAGACGCCGCCCAATGCGGTGCTGATCGGCCTTGCCATGTTCCTGAC
CGGCTTCGTGATGACGCCCACTTTCGAGCGCGCCTGGACAGAGGGCGTGGCGCCGCTGGTGGCCGAAGACATCACCGAAG
AGGAAGCCTTCGACCGGATTTCCGCGCCCTTCCGCGACTTCATGACCGCCCATGTCGGCGAGCGCGAGCTGACGGCCTTC
GTGGATATGGCGGCGCTCGATCCCGAACCGGCATCGGTAGAAGACGTTCCCCTTCAGGTGCTGGTGCCGGCCTTCATGGT
CAGCGAGCTGCGCCGCGCCTTCGAGATCGGCTTCCTGGTCTTCCTGCCCTTCCTGATCATCGACATGCTGGTGGCATCGC
TGCTGATGTCCATGGGCATGATGATGCTGCCGCCGGTGATGATTTCATTGCCGTTCAAATTGATTTTCTTTGTTCTGATC
GACGGCTGGTCGCTCATTGCGGGAAGCCTGGTGCGCAGTTTCGCGGGTTGA

Protein sequence :
MKQGVRHKTAQLAGVLILFLLAALAGSHPAFAQSVTVDLGAEDPGGFTGRIVQLVTLVTVLSLAPGLLVAVTSFTRIVVV
LSLLRSALGVQQTPPNAVLIGLAMFLTGFVMTPTFERAWTEGVAPLVAEDITEEEAFDRISAPFRDFMTAHVGERELTAF
VDMAALDPEPASVEDVPLQVLVPAFMVSELRRAFEIGFLVFLPFLIIDMLVASLLMSMGMMMLPPVMISLPFKLIFFVLI
DGWSLIAGSLVRSFAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-23 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-24 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-24 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-24 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-24 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-24 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-24 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-24 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-25 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-24 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-23 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-22 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-40 53
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-38 52
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG2016 Protein 8e-38 51
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG1259 Protein 6e-40 50
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG0394 Protein 7e-28 45
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG0188 Protein 7e-28 45
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG0044 Protein 9e-24 41
fliP YP_006370539.1 flagellar biosynthetic protein FliP VFG0519 Protein 5e-23 41