Gene Information

Name : fepC (HFX_1843)
Accession : YP_006349528.1
Strain : Haloferax mediterranei CGMCC 1.2087
Genome accession: NC_017941
Putative virulence/resistance : Virulence
Product : iron/cobalamin ABC-type transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.34
Position : 1772911 - 1773795 bp
Length : 885 bp
Strand : +
Note : -

DNA sequence : 
ATGTCAAAGTTGAAATCTGACGAACGCGACGAAGCGGACGAGCACTCGGTCGAGACTATCATGACCGACGAGACGAGCGA
ACACGCTACCGAAAGCGAGCGCCCCGAGAGCGCGCTCACCGGTTCGACCCTCGAACTGTCGTACCCGACGAGCGAGGAAC
CGGTCGTTGAGTGCGACCGTATCGACGTGCCGAGCGGTGAGATTACGGCGCTCGTCGGGCCGAACGGGTCGGGAAAGAGT
ACGCTCCTGAAGTCGCTCGCAAAGCAACTTGAGCCCGACGCGGGACGCGTCTACCTCGACGGAACCGCTATCGACGAGTA
CGACGACAAGGCGTTCGCGCGGGAACTCGGACTGCTCTCGCAGCAACACGACTCGCCGACGTCCCTCTCCGTCGAAGACC
TCGTCTATCACGGCCGGTACCCCCACCGCGGCTTCTTCGAACAGACCAGCGAGGAAGACCGCGCCGCGGTCGAACGCGCA
ATCGACCTCGCTGGTGTCGAGCACATCCGCGACAAACAGGTCGGCAACCTCAGCGGCGGTCAGCGCCAACTCGCGTGGAT
TGCGATGGTGCTCGCACAGGACACCGACGTGCTTCTGTTGGACGAACCGACGACGTACCTCGACTTACACCACCAACTCC
GCGTGCTGGAGACGGTTCGAGAACTCAACGAAGAACGCGGCGTCACCGTCGCGGTCGTTCTCCACGACATCGCACAGGCG
GCGCGCTTTGCCGACTACCTCGTCGCCATGCAGGACGGCGAACTATACGACTGGGGCCCGCCGCGGGAGGTCGTCACCGA
AGAACTCCTCGCCGACGTGTTCCGCGTCGAGGCCGCCGTCAACTACACGCCAGACCCGGAAATCATCCCGAAACACTCGC
TGTAA

Protein sequence : 
MSKLKSDERDEADEHSVETIMTDETSEHATESERPESALTGSTLELSYPTSEEPVVECDRIDVPSGEITALVGPNGSGKS
TLLKSLAKQLEPDAGRVYLDGTAIDEYDDKAFARELGLLSQQHDSPTSLSVEDLVYHGRYPHRGFFEQTSEEDRAAVERA
IDLAGVEHIRDKQVGNLSGGQRQLAWIAMVLAQDTDVLLLDEPTTYLDLHHQLRVLETVRELNEERGVTVAVVLHDIAQA
ARFADYLVAMQDGELYDWGPPREVVTEELLADVFRVEAAVNYTPDPEIIPKHSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-43 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-49 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-49 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-49 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-49 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-48 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-47 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-45 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-45 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-45 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-45 42
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-44 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-44 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepC YP_006349528.1 iron/cobalamin ABC-type transporter ATP-binding protein BAC0164 Protein 3e-43 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepC YP_006349528.1 iron/cobalamin ABC-type transporter ATP-binding protein VFG0925 Protein 9e-52 48
fepC YP_006349528.1 iron/cobalamin ABC-type transporter ATP-binding protein VFG1042 Protein 3e-43 44