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Name : ES15_2634 (ES15_2634) Accession : YP_006343718.1 Strain : Cronobacter sakazakii ES15 Genome accession: NC_017933 Putative virulence/resistance : Virulence Product : outer membrane usher protein LpfC Function : - COG functional category : - COG ID : - EC number : - Position : 2824069 - 2826531 bp Length : 2463 bp Strand : + Note : COG3188 DNA sequence : GTGCAAGCGAGGGCAGATGATTATTTCAACCCGGCATTGCTGGATATTGATAATCCTTCGCAGGGTAAAACCGATTTAAC GCTTTATGAAAAAGGTCCAGGTGCGGCACCGGGGAAATACCGTGTCGATGTTTATATTAATAATGAACGCATCGATACCC GTGAGATAGAATTTACGCTTAAAACCGCGTCCGATGGTAGCAGCACGCTGCAACCCTGCTTCACTCTCGAAGATTTGAAA AGCCTCGGAGTGAAGACTGACGAGTTTGATGCGTTAGACGCAGATGCGAAATGCGTTGACCTTTCGGCCATCCCCTCTGC CAGCGCGCGTTTTGATGTTGGCCGCCAGCAACTCCAGCTTAGCATTGCGCAAAGCGCGCTGGGCCAGGTGCCGCAGGGGT ATATACCGCCTGAGGAATTTAACGAAGGCATTAACGCGCTGTTGTTTAACTACAGCGTGAACGACTCGCGCCAGAAAGCG CTGACGCCGGATGCGCAGGACAGCCGCAATCTTTACGCCAACCTGCGTCCGGGCATTAATCTCGGCCCCTGGCGGCTGCG CAACTACTCTACCTGGAGTCGCAACGAAGACCATTCGGGCACTCAGGAGAAGTTCTCCAGCGTCTATACCTACGCAGAGC GCGACATTGTTGCTCTGAAAAGCGAGCTTACCCTGGGCCAGAGCAGCTCACCCGCGGATGTCTTCGACAGCATTCCTTTT ACCGGTGCGCAGCTTGCCTCTGACGACGACATGCTGCCTGACAGCCTGCGCGGTTACGCCCCCGTGGTACATGGCATCGC ACGCAGTAACGCCCAGGTGATTATTCGCCAGAACGGGTATCTCATCTCCCAGACTAACGTCGCACCTGGCGCATTTGAAA TTAACGATCTCTATCCGAGCGGTAGCAGTGGCGATCTCAACGTAACGGTGAAAGAGAGCGACGGCAGCGAACAGCATTTT GTCGTGCCTTATGCTTCTGTTCCGGTTCTGCAACGCGAAGGACGGCTGAAATATAGCCTTACCGGCGGGCGCTACCGTTC GTATGACGAAAGCGTTTTACCCACTGCGTTTATGCAAGGCACGGCCGTTTATGGCCTGCCACACGGGTTTACGCTTTACG GCGGCATTCAGGCAAGCCAGCCCTACCATTCGCTGGCGCTGGGCGTCGGAGAAAACGTGGGGGATTTTGGCGCGTTCTCG CTGGATGTCACTGAAGCGAAAGCCACATTATCGTCAGGTGAGACACAGAAAGGCCGTTCGTGGCGTGCCCGCTACAGCAA GGATATCGCGCTGACGGGTGCCACGCTCTCGGTGGCGGGTTACCGCTTTAGCAGCGAGAACTATTACGCCATGCAGGATG TTTTTGACACGATGCGCCGCGATAACCAGTGGGCAGACACGCTGCATCGCCGTAGCCGTGAAGAGCTAACGCTTGAGCAG CCGCTGGGCGACGCGCTGGGTTCGCTGAACGCCAGCCTGATTCAGGAAAATTACTGGAACAGCAGCAAAACGATGTCTTC ACTCAGCGTCGGTTACAACAATAGCTGGCACGATATCAGTTACGGGCTTAATTACAGCCTGAACCGTAATACCAGTGAAA ATGGCTACGGCGAACCGGAGCATGAAAAGGACAGCGTCTTTTCTCTCACCCTCTCCATTCCGCTTGAACGCTGGTTGCCC AATACCTGGGCAAGCTACAACCAAAGCCACAGCAAGCAGGGCACCACGCAGAACATCGGCCTTAACGGAACGGCGCTTTC GGATAACAACCTCAACTGGAATATCCAGCAGAGCCAGGACAGTCAAGGCCAGACGCGTAACACCTCACTTAATGCCGATT ACAAAGGCGCTTACGGCGAACTGAGCGCGGGTTACGGCCAGGATGTCAGCCAGCGGCAAATCCATTACGGCATTCAGGGC GGGCTTATCGCCCACGCTAACGGCATCACACTTGGCCAGCCGATGGGTGAAACGGTGGCGCTGGTCGAAGCGCCGGGCGC AAATGATACCGCTATTCACAACCAGACCGGCGTCAGAACCGATGGTCGTGGATACACCATTTTACCGTTTATCAGTCCCT ACCGGCGCAATACCGTCGCGCTGGATACCGAAACGCTGCCCGCCGACGCTGATGTGACGCAGGCGGTACAGACCGTAACG CCCACGCGCGGCGCGGTAGTACGGGCCCGTTTCGATACCCGAACCGGCGCGCGCGTACTGATGACGCTGCATCTGGCTGA TGGTCGCCCGGTGCCGTTTGGCGCGACCGCAACCGCGGATGATACCGCAGAAGAATTTATCGTCGGCGAAGATGGCCAGG TTTATCTGACCGGCCTTCAGCCGAAAGGCACGCTGCAGGTGAGCTGGGGCGCTAACGCCAGCCAGCGCTGCACCGCCGCA TGGCGACTCCCCACCGGGAATGGCGACAGCCAGTTTATTAACCTCTCCGCGCAATGCCTTTAA Protein sequence : MQARADDYFNPALLDIDNPSQGKTDLTLYEKGPGAAPGKYRVDVYINNERIDTREIEFTLKTASDGSSTLQPCFTLEDLK SLGVKTDEFDALDADAKCVDLSAIPSASARFDVGRQQLQLSIAQSALGQVPQGYIPPEEFNEGINALLFNYSVNDSRQKA LTPDAQDSRNLYANLRPGINLGPWRLRNYSTWSRNEDHSGTQEKFSSVYTYAERDIVALKSELTLGQSSSPADVFDSIPF TGAQLASDDDMLPDSLRGYAPVVHGIARSNAQVIIRQNGYLISQTNVAPGAFEINDLYPSGSSGDLNVTVKESDGSEQHF VVPYASVPVLQREGRLKYSLTGGRYRSYDESVLPTAFMQGTAVYGLPHGFTLYGGIQASQPYHSLALGVGENVGDFGAFS LDVTEAKATLSSGETQKGRSWRARYSKDIALTGATLSVAGYRFSSENYYAMQDVFDTMRRDNQWADTLHRRSREELTLEQ PLGDALGSLNASLIQENYWNSSKTMSSLSVGYNNSWHDISYGLNYSLNRNTSENGYGEPEHEKDSVFSLTLSIPLERWLP NTWASYNQSHSKQGTTQNIGLNGTALSDNNLNWNIQQSQDSQGQTRNTSLNADYKGAYGELSAGYGQDVSQRQIHYGIQG GLIAHANGITLGQPMGETVALVEAPGANDTAIHNQTGVRTDGRGYTILPFISPYRRNTVALDTETLPADADVTQAVQTVT PTRGAVVRARFDTRTGARVLMTLHLADGRPVPFGATATADDTAEEFIVGEDGQVYLTGLQPKGTLQVSWGANASQRCTAA WRLPTGNGDSQFINLSAQCL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-145 | 42 |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 8e-137 | 42 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 8e-146 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ES15_2634 | YP_006343718.1 | outer membrane usher protein LpfC | VFG0454 | Protein | 3e-148 | 43 |
| ES15_2634 | YP_006343718.1 | outer membrane usher protein LpfC | VFG0876 | Protein | 2e-146 | 42 |
| ES15_2634 | YP_006343718.1 | outer membrane usher protein LpfC | VFG0446 | Protein | 3e-138 | 41 |
| ES15_2634 | YP_006343718.1 | outer membrane usher protein LpfC | VFG1645 | Protein | 4e-146 | 41 |
| ES15_2634 | YP_006343718.1 | outer membrane usher protein LpfC | VFG0912 | Protein | 7e-147 | 41 |
