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Name : fimD1 (ES15_2126) Accession : YP_006343210.1 Strain : Cronobacter sakazakii ES15 Genome accession: NC_017933 Putative virulence/resistance : Virulence Product : type 1 fimbriae anchoring protein FimD Function : - COG functional category : - COG ID : - EC number : - Position : 2264789 - 2266990 bp Length : 2202 bp Strand : - Note : COG3188;K07347 DNA sequence : GTGAGAACGACATTATTCCCTGAGCTTAATGCTGATGGAAAATGCGCGCGTTTATCTGCCATTCCTAAAGCTTCTTCTGA GTTCTTATTTAATGCGCAAAAGCTGGTTCTGAGCATACCGCAAGCGGCTTTGTCGCCGCAGGCGCGTGGTTATGTAGACC CTGCACTCTGGGATGAGGGTATTCCCGCTGCGATGCTTAACTACAGCATGAGTGGTGCGAATAATTACGCCGATAAGGGG GCAAACAGCAACAGCCAGTACGCCAACCTGCGCCCGGGGATTAACCTGGGAGCCTGGCGGTTGCGTAACTACACGACCTG GAACCGCGACGAAAAAGGTAAGGATAAATGGGATACCGTTTATACGTATCTGCAACGCAATATTGTACCGCTCAAAGCAA AACTGGTGGCGGGTGATAGCTCCTCGCCAGCGGATGTGTTTGACAGTATCTCGTTTCGTGGGGCCCAGCTTGCTTCTGAT GACGACATGATACCCGAATCCCAGCGCGGCTATGCGCCAGTCGTGCGTGGTGTGGCTCGCACCAATGCGCAAATTGTGAT TCGGCAGAATGGCTATGTCATTTATCAAAGCTATGTGGCAGCAGGTGCCTTTGAAATTACCGACATGTATTCCACTGGCG GCGCGGGCGATCTGAATGTCACGGTGAAAGAGGCTGACGGGAGTGAACAGCATTTTGTGGTGCCGTTTGCCTCCTTACCG GTATTACAACGTGAAGGTCGTCTGAAGTACGCCCTAACGGGCGGTCAGTATCGTTCTTATGATAGCAGCGTCGAAAAAAC ACCGTTTGCCCAGTTTACTGGGATCTTCGGTCTTCCGCGCGGCTTTACATTGTATGGCGGTCTCCAGGAGGCAAGTAAAT ACCAGGCACTGGCGCTCGGTCTCGGTAAGAATATGGGGGCCATCGGTGCCATTTCTGCAGATGTCATTCAGGCATGGTCA CGCCTTAAAGACATGGAGAAGAGCAGCGGTCAGTCCTGGCGCATTCGCTACAGTAAAGACTTTGTAGAAACCGGCACTAA CTTTTCAATCGCAGGTTACCGTTACTCTACAGCGGGCTTCTACAGTATGCAGGAAGTGCTTGATTCCTATGGTAACAATT CAGCTATGCTGGATCGCCGCCGTAACCGGGCAGAGCTGTCTATCAGCCAGTCGCTTGGAGGTTCGCTGGGCTCGCTGACC GCCAGTGCGGTACGTGAAGATTACTGGGGTAAGAACAAAACCATGGAGTCGTATAACGTTGGTTATAACAACTCCTGGCG GGGTATCAGCTATGGGCTGACCTATACCTACAGTAAAAACGGCAGCGCCGGTAACTACAACAACAGCGTGAGTTACGACA AAGACCAGATTATAGCCCTCAATATCAGCGTGCCGCTGGAGCGTTTTTTGAGCAACACCTGGGCCAATTACAGCATGAAT GACAGTAAAAACAACGGCACTACGCATACTGCGGGCATGAGCGGTATGGCGCTGGAAAATAATGCGTTGAGCTGGAATGT GCAACAAGGCTATGGGAGCGATGACATCGGGTATAGCGGTAACATGAACGCTGATTATAAAGGCACCTACGGCGAAATGA CGGCAGGCTACAGCTACGACAAAAATGGCGAACGCCTGAACTATGGCCTGCAGGGCGGCATCATGGCTCATGAAGATGGT ATCACGCTGTCGCAGCCGCTGGGTGAAACTAACGTACTGGTCAAAGCGCCAGGCGCGGGCGGCGTCAGTATTCAAAACCA GACGGGCGCGAAAACCGACTTTCGTGGGTATACCACGGTGAGCAATGTGACACCGTACCGTAAGAATGATGTAACGCTTA ATACGGAAAGCATGCCGGACGATGTGGATCTGGAACTCACCAGCCGTACCGTCGTGCCAACGCGCGGAGCGGTAGTACGT GCTGAATATGTGGCCAATGTCGGTTTGCGTGTGCTTATGACGCTGCTTCAGGCTAATGGCCAGCCAGTGCCCTTTGGCGC TACGGTCACAGTTCCAGGTCAACATAACCAAGGATTCATCGTCGGCGATAAAGGGCAGGTGTATATCACAGGTTTGCAGC CAGAAGGCACGTTAAACGTTCAGTGGGGGCAAACAAATAATGAAATGTGTGGCGTGAATTACCACCTTCCTGAAACAGAA ACAACAAGCGGAATATTAACCTTCAACGGGCATTGTAAGTAA Protein sequence : MRTTLFPELNADGKCARLSAIPKASSEFLFNAQKLVLSIPQAALSPQARGYVDPALWDEGIPAAMLNYSMSGANNYADKG ANSNSQYANLRPGINLGAWRLRNYTTWNRDEKGKDKWDTVYTYLQRNIVPLKAKLVAGDSSSPADVFDSISFRGAQLASD DDMIPESQRGYAPVVRGVARTNAQIVIRQNGYVIYQSYVAAGAFEITDMYSTGGAGDLNVTVKEADGSEQHFVVPFASLP VLQREGRLKYALTGGQYRSYDSSVEKTPFAQFTGIFGLPRGFTLYGGLQEASKYQALALGLGKNMGAIGAISADVIQAWS RLKDMEKSSGQSWRIRYSKDFVETGTNFSIAGYRYSTAGFYSMQEVLDSYGNNSAMLDRRRNRAELSISQSLGGSLGSLT ASAVREDYWGKNKTMESYNVGYNNSWRGISYGLTYTYSKNGSAGNYNNSVSYDKDQIIALNISVPLERFLSNTWANYSMN DSKNNGTTHTAGMSGMALENNALSWNVQQGYGSDDIGYSGNMNADYKGTYGEMTAGYSYDKNGERLNYGLQGGIMAHEDG ITLSQPLGETNVLVKAPGAGGVSIQNQTGAKTDFRGYTTVSNVTPYRKNDVTLNTESMPDDVDLELTSRTVVPTRGAVVR AEYVANVGLRVLMTLLQANGQPVPFGATVTVPGQHNQGFIVGDKGQVYITGLQPEGTLNVQWGQTNNEMCGVNYHLPETE TTSGILTFNGHCK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 2e-131 | 43 |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-135 | 42 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 3e-132 | 42 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 3e-132 | 42 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 1e-135 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimD1 | YP_006343210.1 | type 1 fimbriae anchoring protein FimD | VFG0454 | Protein | 1e-154 | 45 |
| fimD1 | YP_006343210.1 | type 1 fimbriae anchoring protein FimD | VFG0876 | Protein | 6e-142 | 43 |
| fimD1 | YP_006343210.1 | type 1 fimbriae anchoring protein FimD | VFG0446 | Protein | 2e-133 | 42 |
| fimD1 | YP_006343210.1 | type 1 fimbriae anchoring protein FimD | VFG1645 | Protein | 7e-136 | 42 |
| fimD1 | YP_006343210.1 | type 1 fimbriae anchoring protein FimD | VFG0912 | Protein | 2e-135 | 42 |
| fimD1 | YP_006343210.1 | type 1 fimbriae anchoring protein FimD | VFG0944 | Protein | 3e-129 | 41 |
