Gene Information

Name : Y1U_C1908 (Y1U_C1908)
Accession : YP_006341022.1
Strain : Streptococcus thermophilus MN-ZLW-002
Genome accession: NC_017927
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1845714 - 1846217 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence : 
GTGGATATGTGCTATAATGAACCTATGAAAGTTAAATTGATTACTGTTGGAAAATTGAAAGAAAAATATTTGAAAGATGG
CATTGCAGAGTATATCAAACGACTAGGACGCTTCACAAAATTTGAGTCTATAGAGTTGACGGATGAGAAGACGCCTGATA
ATGCAAGCGAATCTGAAAATAAAGCTATCCTAGACAAAGAAGGACAGCGTATTTTGGCTAAGGTTGGTGACCGTGATTAC
GTCATTGCCTTAGCAATTGAGGGAAAGCAATTTCCCTCAGAACAGTTTGCCAAAGAGTTAGAGCAAGCGACCCTTAGAGG
CTATTCAGATATTACTTTTATTATAGGGGGGAGTTTGGGGCTATCACCTAAAGTGAAAAAGAGGGCTAATCAATTGATGA
GTTTTGGTCTTTTGACTTTTCCTCATCAGCTTATGCGCCTTGTATTAGTGGAACAAATTTATCGTGCATTCATGATTCAG
CAAGGAAGTCCATATCATAAGTAG

Protein sequence : 
MDMCYNEPMKVKLITVGKLKEKYLKDGIAEYIKRLGRFTKFESIELTDEKTPDNASESENKAILDKEGQRILAKVGDRDY
VIALAIEGKQFPSEQFAKELEQATLRGYSDITFIIGGSLGLSPKVKKRANQLMSFGLLTFPHQLMRLVLVEQIYRAFMIQ
QGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 9e-39 55
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 9e-39 55
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-38 55
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 9e-39 55
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-38 55
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 9e-39 55
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 4e-38 55
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 9e-39 55
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-38 55
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 9e-39 55
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-38 55
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 9e-39 55
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 9e-39 55
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-38 55
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 9e-39 55
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 9e-39 55
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 5e-36 53
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-37 51