Gene Information

Name : cagH (MWE_0980)
Accession : YP_006338472.1
Strain : Helicobacter pylori XZ274
Genome accession: NC_017926
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 892929 - 893873 bp
Length : 945 bp
Strand : +
Note : -

DNA sequence : 
ATGACCGCTATCATGACCCAATACAATCAGAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAACCAACAATA
CAACCAATTGTATCAAGGTTTTAACGATCAAAGCGTGGCTGTGGGGAACAATATCTTAAATATCAGCAAATTAACAGGGG
AATTTAACGCGCAAGGCAACACGCAAGGCGCGCAAATTAGTGCTGTTAATAGTCAGATTGCAAGCATTTTAGCGAGTAAC
ACGACCCCTAAAAATCCTAGCGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGTGTGCCAACAACGGTTGA
AACGATGAGCGGTATCTTAGGCAATATTACAAGTGCAGCACCAAAATACGCCCTAGCTCTACAAGAGCAACTGCGTTCTC
AAGCAAGCAACAGTTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGTTGGCTCATCA
AAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAATACCAAGC
GTTAGCCACTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTTCTGCATGCCCTATTGGGGACAAAGTTCTTGCCG
TTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCAATTTGTTG
CAAAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCTAACATAAG
CTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATTTGACTTATCTTGATTACATCAAAGACA
AACTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAGATAATCGTGAAGTGA

Protein sequence : 
MTAIMTQYNQSIAEAVSMPMKAANQQYNQLYQGFNDQSVAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASN
TTPKNPSAIEAYATNQIAVPSVPTTVETMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSS
KVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTSACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLL
QNASQMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-140 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 2e-139 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 2e-139 99
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-139 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 1e-139 99
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-139 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 8e-139 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-140 99
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 8e-139 99
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 3e-139 99
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-140 99
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-139 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 1e-139 99
cagH AAC44699.1 CagH Virulence cag PAI Protein 6e-140 99
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-139 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 5e-140 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 6e-140 99
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-139 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 2e-140 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-138 98
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-138 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 5e-138 98
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 98
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 2e-138 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagH YP_006338472.1 cag pathogenicity island protein H VFG0300 Protein 2e-138 98