Gene Information

Name : MWE_0976 (MWE_0976)
Accession : YP_006338468.1
Strain : Helicobacter pylori XZ274
Genome accession: NC_017926
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 887966 - 888505 bp
Length : 540 bp
Strand : +
Note : -

DNA sequence : 
TTGGCAAATGATGATAATCAAGCGAAAAAAGAAGCGCTAGAAAAAGAAAAAAACACTCCTAGTGGGCGTGTTTATACGAA
TTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCCGATA
TTATCAAAGATGAAGTTTTTGATTTCGTGATTGTCAATAGAGTCCTTAAAAAGATAAAGGATTTGAAGCATTACGATCCA
ATTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGATTGAATGTGGAATTGCAGATCAATCCTGAAGTGAAAGA
CTTTTTCACTTTCAAAAGCATCAGCACAACCAACAAACAACGCTGCTTCCTATCATTGCGCGGGGAAACAAGAGAAATTT
TATGCGATGATAAGCTGTATAATGTTTTATTGGCCGTATTCAATTCTTATGATCCTAATGATCTTTTGAAACACATTAGC
ACCGTAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MANDDNQAKKEALEKEKNTPSGRVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDP
IIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHIS
TVESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 4e-76 99
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-77 98
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 6e-77 98
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-77 98
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 98
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-77 98
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 98
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 98
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-75 98
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 1e-75 98
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-76 98
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 1e-75 98
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-75 97
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 97
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 2e-75 97
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 97
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-75 97
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-75 97
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-75 97
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 7e-75 97
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 1e-74 97
cagD AAF80210.1 CagD Virulence cag PAI Protein 1e-74 97
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-74 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MWE_0976 YP_006338468.1 cag pathogenicity island protein D VFG0304 Protein 5e-76 97