Gene Information

Name : MYA_0034 (MYA_0034)
Accession : YP_006331135.1
Strain :
Genome accession: NC_017920
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 46512 - 47273 bp
Length : 762 bp
Strand : -
Note : -

DNA sequence :
ATGAAACACGACTTCCTGCGTCACGCGGCGCGCTTCGCGCCCGTGCTGATCCTCGGCCTCTTCCCCGCGCTCGCGTGCGC
GCAGGCGGCCGGCCTGCCCGCGTTCAACACGAGCCCGGGCCCGAACGGCGGCACCACCTATTCGCTGAGCGTGCAGACGA
TGCTGCTGCTCACGATGCTGTCGTTCCTGCCGGCGATGCTGCTGATGATGACGAGCTTCACGCGCATCATCATCGTGCTG
TCGCTGCTGCGCCAGGCGCTCGGCACCGCGACGACGCCGCCGAACCAGGTGCTGCTCGGCCTCGCGATGTTCCTCACCTT
CTTCGTGATGTCGCCGGTGCTCGACAAGGCCTACAACGACGGCTACAAGCCGTTCTCCGACGGCTCGCTGCCGATGGAGC
AGGCCGTGCAGCGCGGCGTCGCGCCGTTCAAGGGCTTCATGCTGAAGCAGACCCGCGAGACCGATCTCGCGCTGTTCGCG
AAGATCTCGAAGGCCGCGCCGATGCAGGGGCCGGAGGACGTGCCGCTGTCGCTGCTGGTGCCGGCGTTCGTCACGAGCGA
GCTGAAGACGGGCTTCCAGATCGGCTTCACGATCTTCATTCCGTTCCTGATCATCGACCTGGTGGTCGCGAGCGTGCTGA
TGTCGATGGGGATGATGATGGTGTCGCCGTCCACCGTGTCGCTGCCGTTCAAGCTGATGCTGTTCGTGCTGGTCGACGGC
TGGCAGCTGCTGATCGGCTCGCTCGCGCAGAGCTTCACGTAA

Protein sequence :
MKHDFLRHAARFAPVLILGLFPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVL
SLLRQALGTATTPPNQVLLGLAMFLTFFVMSPVLDKAYNDGYKPFSDGSLPMEQAVQRGVAPFKGFMLKQTRETDLALFA
KISKAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDG
WQLLIGSLAQSFT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-25 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-24 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-23 41
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-14 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-26 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-26 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-26 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-15 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-27 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-27 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-23 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-23 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MYA_0034 YP_006331135.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-83 89
MYA_0034 YP_006331135.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-64 70
MYA_0034 YP_006331135.1 flagellar biosynthesis protein FliP VFG1259 Protein 6e-55 61
MYA_0034 YP_006331135.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-50 55
MYA_0034 YP_006331135.1 flagellar biosynthesis protein FliP VFG0394 Protein 1e-23 42
MYA_0034 YP_006331135.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-24 42
MYA_0034 YP_006331135.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-23 41