Gene Information

Name : PflA506_0940 (PflA506_0940)
Accession : YP_006322461.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1064634 - 1065326 bp
Length : 693 bp
Strand : -
Note : identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCGCGTCCTGATTATTGAAGATGAAGAAAAAACCGCGGACTACCTGCACCGCGGCCTGACCGAGCAAGGCTACACCGT
CGATGTCGCCCGTGAAGGCATCGAGGGCCTGCACCTGGCGCTGGAAAACGATTACGCAGTGATCGTGCTCGACGTGATGC
TGCCCGGGCTGGATGGCTTCGGTGTACTGCGCGCCTTACGCGCCCGCAAGCAGACGCCGGTGATCATGCTCACCGCTCGC
GAGCGCGTTGAAGACCGCATCCGCGGCCTGCGCGAAGGCGCCGACGATTACCTGGGCAAGCCGTTTTCGTTCCTGGAACT
GGTGGCCCGCCTGCAAGCCCTGACCCGCCGCAGCGGCGGCCATGAACCGGTGCAGGTCACCGTTGCCGACCTGTGGATCG
ACCTGATCAGCCGCAAGGCCAGCCGCAACGGTGTACGCCTGGACCTGACCGCCAAGGAGTTCTCGCTGCTCAGCGTATTG
GCGCGACGCCAGGGCGAGATCCTGTCCAAGACCGCGATTGCCGAGATGGTCTGGGACATCAATTTCGACAGCGATGCCAA
CGTGGTGGAAGTGGCGATCAAGCGTCTGCGCGCCAAGCTCGACGGGCCGTTCGAACACAAGCTGCTGCACACCATTCGTG
GCATGGGCTATGTGCTGGAAAACCGCATGCAGGAAAACCACAGTGGTCGCTAA

Protein sequence : 
MRVLIIEDEEKTADYLHRGLTEQGYTVDVAREGIEGLHLALENDYAVIVLDVMLPGLDGFGVLRALRARKQTPVIMLTAR
ERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVL
ARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKLDGPFEHKLLHTIRGMGYVLENRMQENHSGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-56 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-56 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator BAC0125 Protein 1e-62 56
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator BAC0197 Protein 2e-58 55
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator BAC0083 Protein 6e-57 55
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator BAC0638 Protein 2e-50 55
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator BAC0111 Protein 1e-57 53
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator BAC0308 Protein 2e-54 50
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator BAC0347 Protein 1e-51 50
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator VFG0596 Protein 1e-56 56
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator VFG1389 Protein 1e-39 48
PflA506_0940 YP_006322461.1 DNA-binding heavy metal response regulator VFG1386 Protein 2e-35 44