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Name : rspS (PflA506_0716) Accession : YP_006322245.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type III secretion system transcriptional regulator RspS Function : - COG functional category : - COG ID : - EC number : - Position : 828760 - 829683 bp Length : 924 bp Strand : - Note : identified by similarity to GB:AAT96283.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 DNA sequence : ATGTCGGCCTACGTCCAGAAGGATAATACAACAGACGTTTCACTCATCGATGGTCAGGAAATTGAAACCACACTTAACAA CACTGCCGCGCTTAACGTTGACATCCTGCTGTTGGGAGAAACGGGTACCGGCAAAGATACGCTTGCACAACGGATTCATC GCTTATCGGGTCGACGAGGTAATTTTGTCGCCGTGAACTGTGCGGCCATCCCTGAAAGCCTGGCGGAAAGCCAGCTGTTC GGTGTCAACAGCGGCGCCTACACCGGGGCAGTGCAATCAAGGGCTGGATTTGTCGAAGCCGCCCACTTGGGTACTCTGTA CCTTGATGAGATCGACAGCATGCCCTTGAGCCTGCAAGCCAAGCTACTGCGTGTGCTGGAGTGCCGCGGGGTGGAGCGCC TGGGTTCGACTCGGTTCATTTCCGTGGACATGCGCGTCATTGCATCGGCCCAGCAATCCCTGCAAATCATGGTCGACCAG GGCGCCTTCAGGCGTGATCTCTACTTTCGGCTGAATGTCGTGAACATCGAACTGCCCGCCCTGCGCGATCGGCGCGAGCG CATCATCCCGTTGTTTCTGCAGATGATTCAGGAAGAAGCAGACCAGTTCAATTGCACACCTCCATCGCCTTCTGACGGCC TGTTGCATGAACTGCTCTGCCACCCCTGGCTGGGTAATGTTCGCGAGCTACGCTCGGCGGCGAAACGGTTCGTCCTGGGC CTCCCGCCGCTCTCAGCCCCCGCCTGCCGTCAGCCGCCCCCTCAGACGGACCTGAAGGCACGCCTTCAACAAATTGAAAA AGCGTTGATTGAAGAGTCGATGTACCGTCACCAACACTGTGTGGATACCGTAGCCATTGAGCTGGGGGTTGCGAAGCGCA CGCTGTATTACAGAATGAAACAATTGAACATATCATTGGCATAA Protein sequence : MSAYVQKDNTTDVSLIDGQEIETTLNNTAALNVDILLLGETGTGKDTLAQRIHRLSGRRGNFVAVNCAAIPESLAESQLF GVNSGAYTGAVQSRAGFVEAAHLGTLYLDEIDSMPLSLQAKLLRVLECRGVERLGSTRFISVDMRVIASAQQSLQIMVDQ GAFRRDLYFRLNVVNIELPALRDRRERIIPLFLQMIQEEADQFNCTPPSPSDGLLHELLCHPWLGNVRELRSAAKRFVLG LPPLSAPACRQPPPQTDLKARLQQIEKALIEESMYRHQHCVDTVAIELGVAKRTLYYRMKQLNISLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 2e-80 | 61 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 2e-80 | 61 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 3e-73 | 60 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 9e-77 | 59 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 9e-80 | 59 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 2e-79 | 59 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 7e-78 | 59 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 7e-78 | 59 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 8e-75 | 59 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 1e-73 | 58 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-73 | 58 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-70 | 58 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 2e-79 | 57 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 2e-79 | 57 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 2e-79 | 57 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 2e-77 | 56 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 3e-79 | 56 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 6e-72 | 55 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 6e-72 | 55 |
