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Name : rscU (PflA506_0705) Accession : YP_006322234.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type III secretion protein RscU Function : - COG functional category : - COG ID : - EC number : - Position : 821325 - 822422 bp Length : 1098 bp Strand : + Note : identified by similarity to GB:AAK81926.1; similarity to GB:CAY46987.1; match to protein family HMM PF01312; match to protein family HMM TIGR01404 DNA sequence : GTGAGTGATTCGGGGGAAAAAAAGCACCCGGCGTCCGCCAAGAAACTGCGTGACCAACGCAAGAAAGGTCAGGTCGCGCA AAGCCAGGATGTGAGCAAGCTGTTGGCACTGACGGCTATCAGTGAAGTCGCCTTGTTCACTGCCGAGACCAGTTTGCAGC GCTTTCAGCAACTGATGGTGTTCCCGATGTCGCGCTTGAGCCAGCCGTTTGTGCGAGTGCTGGAAGAAGTACTGGTGGAG GGCCTGGTCATGTTTTTCTCGTTCTCTCTGCTGATGGCCGGGCTTGCAATTGCTGCGAAGCTGATTGGCAGCTGGATGCA GTTCGGCTTGTTGTTCGCCCCGCAAACGCTCAAGCTGGATTTCAATCGCCTCAACCCTATCAGCCAGATCAAGCAGATGT TTTCTGCCCAGTCTTTGATGAATCTGTTGATGAGCATAGCCAAGGCGTTCCTCCTGGGCCTGATTGTGTACGTGGTGGTT TGGCCCTCTTTGGGGGCGTTGATCAATCTTGCCAACAGCGATCTGCAGAGTTACCTACTGGCGCTGATCGCGTTGTTCCG TCACTTGCTGCATGCCTGCCTGGGGCTGTTGCTGGTGTTGGCGTTGATCGATCTGACGTTGCAGAAGCACTTCTTCGCCA AGCGTATGCGCATGACACAGGTTGAGGTCGTCAAAGAATACAAAGACATGGAAGGCGACCCTCATGTGAAGGGGCAGCGC CGTCAGTTGGCGCAGCAATTGGCCCAGGAGGAACCGAAGGTCAAACTGCCCAAGCTGGAAGAGGCAGACATGCTGGTAGT CAACCCGACGCACTTTGCGGTCGCCCTGTATTACCGTCCTGGCAAGACGCCTCTGCCCCTGCTGATCAGTAAAGGCACGG ACGACGAGGCGCGAAAACTGATCGCGCGCGCGAAGGCCGCCGAGGTGCCCGTGATTCAGTGTGTGTGGTTGGCGCGTACG ATCTACACCAAAAAGTTGGGAGCCAGCATTCCTCGCGAAGCCCTGCAGGCCGTGGCGTTGATCTATCGCACCTTGCGCGA GCTGGACGATGACGCCAAACGCGAGACGCTGGAGCTCCCGGAGCTTGACCAGCGCTGA Protein sequence : MSDSGEKKHPASAKKLRDQRKKGQVAQSQDVSKLLALTAISEVALFTAETSLQRFQQLMVFPMSRLSQPFVRVLEEVLVE GLVMFFSFSLLMAGLAIAAKLIGSWMQFGLLFAPQTLKLDFNRLNPISQIKQMFSAQSLMNLLMSIAKAFLLGLIVYVVV WPSLGALINLANSDLQSYLLALIALFRHLLHACLGLLLVLALIDLTLQKHFFAKRMRMTQVEVVKEYKDMEGDPHVKGQR RQLAQQLAQEEPKVKLPKLEEADMLVVNPTHFAVALYYRPGKTPLPLLISKGTDDEARKLIARAKAAEVPVIQCVWLART IYTKKLGASIPREALQAVALIYRTLRELDDDAKRETLELPELDQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | ABQ88362.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-64 | 54 |
| hrpY | AAB05078.1 | HrpY | Virulence | Hrp PAI | Protein | 2e-64 | 54 |
| hrcU | NP_791219.1 | type III secretion protein HrcU | Virulence | Hrp PAI | Protein | 3e-63 | 53 |
| hrcU | AAT96149.1 | HrcU | Virulence | T-PAI | Protein | 7e-66 | 53 |
| hrcU | AAT96203.1 | HrcU | Virulence | T-PAI | Protein | 7e-66 | 53 |
| hrcU | AAG33887.1 | HrcU | Virulence | Hrp PAI | Protein | 2e-51 | 53 |
| hrcU | AAC35808.1 | hrp type III pathway protein | Virulence | Hrp PAI | Protein | 4e-54 | 52 |
| hrcU | AAT96265.1 | HrcU | Virulence | S-PAI | Protein | 3e-65 | 50 |
| hrcU | AAT96346.1 | HrcU | Virulence | S-PAI | Protein | 2e-65 | 50 |
| hrcU | AAT96306.1 | HrcU | Virulence | S-PAI | Protein | 4e-65 | 50 |
| hrcU | ABA47282.1 | HrcU | Virulence | S-PAI | Protein | 2e-65 | 49 |
| hrcU | AAB06008.1 | HrcU | Virulence | Hrp PAI | Protein | 6e-64 | 48 |
