Gene Information

Name : rscS (PflA506_0703)
Accession : YP_006322232.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : type III secretion protein RscS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 820266 - 820529 bp
Length : 264 bp
Strand : +
Note : identified by similarity to GB:ABB91648.1; match to protein family HMM PF01313; match to protein family HMM TIGR01403

DNA sequence :
ATGGAACCTATCGTGCTGTTCAAGCAGGGCATGTTGCTGGTGGTTGTACTGTCGGCGCCGCCGCTGATCGTGGCGGTGGT
GGTGGGGGTACTGACTTCCCTGGTACAAGCACTGATGCAGATCCAGGACCAGACATTACCCTTTGGTATCAAGCTGGTGG
CGGTGGGTGTCACATTGATCCTGACGGGCCGCTGGATTGGCGTTGAGTTGATCCAGCTGATCAACCTGACGTTTGAAATG
ATCGGCCGTTCGGCCCTGAACTGA

Protein sequence :
MEPIVLFKQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLILTGRWIGVELIQLINLTFEM
IGRSALN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 1e-21 76
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 2e-21 76
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 3e-20 75
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 1e-21 74
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 1e-21 74
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 3e-21 74
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 3e-21 74
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 1e-19 74
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 1e-19 74
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 1e-19 74
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 8e-18 68
lscS AAO18039.1 LscS Virulence TTSS locus Protein 4e-08 54
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 2e-06 48
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 2e-06 48
escS AAK26701.1 EscS Virulence LEE Protein 1e-06 48
escS AAL57528.1 EscS Virulence LEE Protein 1e-06 48
escS CAC81848.1 EscS protein Virulence LEE II Protein 1e-06 48
escS AAC31527.1 L0048 Virulence LEE Protein 2e-06 47
ECs4582 NP_312609.1 EscS Virulence LEE Protein 3e-06 47
escS ACU09472.1 hypothetical protein Not tested LEE Protein 2e-06 47
escS CAI43888.1 EscS protein Virulence LEE Protein 2e-06 47
escS YP_003236102.1 T3SS structure protein EscS Virulence LEE Protein 3e-06 47
escS AAC38370.1 EscS Virulence LEE Protein 2e-06 47
escS NP_290282.1 hypothetical protein Virulence LEE Protein 3e-06 47
unnamed AAL06355.1 EscS Virulence LEE Protein 2e-06 46
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 5e-06 44
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 2e-06 41
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 1e-06 41
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 2e-04 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rscS YP_006322232.1 type III secretion protein RscS VFG0395 Protein 2e-07 59
rscS YP_006322232.1 type III secretion protein RscS VFG0187 Protein 0.055 55
rscS YP_006322232.1 type III secretion protein RscS VFG0043 Protein 2e-08 47
rscS YP_006322232.1 type III secretion protein RscS VFG0826 Protein 9e-07 47
rscS YP_006322232.1 type III secretion protein RscS VFG0716 Protein 9e-07 47
rscS YP_006322232.1 type III secretion protein RscS VFG2454 Protein 0.001 42
rscS YP_006322232.1 type III secretion protein RscS VFG2132 Protein 9e-06 41