|
Name : rscS (PflA506_0703) Accession : YP_006322232.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type III secretion protein RscS Function : - COG functional category : - COG ID : - EC number : - Position : 820266 - 820529 bp Length : 264 bp Strand : + Note : identified by similarity to GB:ABB91648.1; match to protein family HMM PF01313; match to protein family HMM TIGR01403 DNA sequence : ATGGAACCTATCGTGCTGTTCAAGCAGGGCATGTTGCTGGTGGTTGTACTGTCGGCGCCGCCGCTGATCGTGGCGGTGGT GGTGGGGGTACTGACTTCCCTGGTACAAGCACTGATGCAGATCCAGGACCAGACATTACCCTTTGGTATCAAGCTGGTGG CGGTGGGTGTCACATTGATCCTGACGGGCCGCTGGATTGGCGTTGAGTTGATCCAGCTGATCAACCTGACGTTTGAAATG ATCGGCCGTTCGGCCCTGAACTGA Protein sequence : MEPIVLFKQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLILTGRWIGVELIQLINLTFEM IGRSALN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcS | NP_791221.1 | type III secretion protein HrcS | Virulence | Hrp PAI | Protein | 2e-21 | 76 |
| hrcS | AAG33885.1 | HrcS | Virulence | Hrp PAI | Protein | 1e-21 | 76 |
| hrcS | ABA47280.1 | HrcS | Virulence | S-PAI | Protein | 3e-20 | 75 |
| hrcS | ABQ88360.1 | HrcS | Virulence | Hrp PAI | Protein | 3e-21 | 74 |
| hrpO | AAB05076.1 | HrpO | Virulence | Hrp PAI | Protein | 3e-21 | 74 |
| hrcS | AAT96147.1 | HrcS | Virulence | T-PAI | Protein | 1e-21 | 74 |
| hrcS | AAT96201.1 | HrcS | Virulence | T-PAI | Protein | 1e-21 | 74 |
| hrcS | AAT96304.1 | HrcS | Virulence | S-PAI | Protein | 1e-19 | 74 |
| hrcS | AAT96344.1 | HrcS | Virulence | S-PAI | Protein | 1e-19 | 74 |
| hrcS | AAT96263.1 | HrcS | Virulence | S-PAI | Protein | 1e-19 | 74 |
| hrcS | AAB06006.1 | HrcS | Virulence | Hrp PAI | Protein | 8e-18 | 68 |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 4e-08 | 54 |
| escS | AAK26701.1 | EscS | Virulence | LEE | Protein | 1e-06 | 48 |
| escS | AAL57528.1 | EscS | Virulence | LEE | Protein | 1e-06 | 48 |
| escS | CAC81848.1 | EscS protein | Virulence | LEE II | Protein | 1e-06 | 48 |
| escS | YP_003223489.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 2e-06 | 48 |
| escS | YP_003232139.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 2e-06 | 48 |
| escS | YP_003236102.1 | T3SS structure protein EscS | Virulence | LEE | Protein | 3e-06 | 47 |
| escS | AAC38370.1 | EscS | Virulence | LEE | Protein | 2e-06 | 47 |
| escS | NP_290282.1 | hypothetical protein | Virulence | LEE | Protein | 3e-06 | 47 |
| escS | AAC31527.1 | L0048 | Virulence | LEE | Protein | 2e-06 | 47 |
| ECs4582 | NP_312609.1 | EscS | Virulence | LEE | Protein | 3e-06 | 47 |
| escS | ACU09472.1 | hypothetical protein | Not tested | LEE | Protein | 2e-06 | 47 |
| escS | CAI43888.1 | EscS protein | Virulence | LEE | Protein | 2e-06 | 47 |
| unnamed | AAL06355.1 | EscS | Virulence | LEE | Protein | 2e-06 | 46 |
| spaQ | AAS66866.1 | SpaQ | Not tested | SSR-2 | Protein | 5e-06 | 44 |
| ECs3724 | NP_311751.1 | EpaQ | Not tested | LIM | Protein | 2e-06 | 41 |
| epaQ | AAZ31292.1 | EpaQ | Virulence | ETT2 | Protein | 1e-06 | 41 |
| ysaS | AAS66847.1 | YsaS | Not tested | SSR-1 | Protein | 2e-04 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rscS | YP_006322232.1 | type III secretion protein RscS | VFG0395 | Protein | 2e-07 | 59 |
| rscS | YP_006322232.1 | type III secretion protein RscS | VFG0187 | Protein | 0.055 | 55 |
| rscS | YP_006322232.1 | type III secretion protein RscS | VFG0043 | Protein | 2e-08 | 47 |
| rscS | YP_006322232.1 | type III secretion protein RscS | VFG0716 | Protein | 9e-07 | 47 |
| rscS | YP_006322232.1 | type III secretion protein RscS | VFG0826 | Protein | 9e-07 | 47 |
| rscS | YP_006322232.1 | type III secretion protein RscS | VFG2454 | Protein | 0.001 | 42 |
| rscS | YP_006322232.1 | type III secretion protein RscS | VFG2132 | Protein | 9e-06 | 41 |
