Gene Information

Name : rscR (PflA506_0702)
Accession : YP_006322231.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : type III secretion protein RscR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 819605 - 820258 bp
Length : 654 bp
Strand : +
Note : identified by similarity to GB:AAK81923.1; match to protein family HMM PF00813; match to protein family HMM TIGR01102

DNA sequence : 
ATGATTCTTCAGGGGCTGGACCCGGTAGTTCTGGCGGTATTTCTGGGGGCGTTGTCGTTGATGCCCATGCTGTTGGTTGT
CTGCACAGCCTTCTTGAAAATCGTGATTGTGCTGATGATTACCCGCAATGCCATCGGCGTACAACAGGTGCCTCCAAGCA
TGGCCATCAACGGAATCGCCCTGGCTGCCACCTTGTTCATCATGGCACCGGTGGGGTATGAGATCGCCGAGAACCTCAAG
GCTTCGCCTCTGGACATGACCAACGTGCAAACGTTTCTGAGTACCGGCAATGAGGCCATCAACCCCTTGCGTGCCTTCAT
GCTGCGTAATGTGGACCCGGATGTGCTGACCCATCTATTGGAAAATACCGCACGTCTGTGGCCAGCGAAAATGGCGCAGG
AGGTGCAGCGTGAGGATCTTATCCTGCTGATTCCGGCCTTTGTGCTTTCGCAATTGCAGGCGGGGTTCGAGATCGGGTTC
CTGATATATATCCCCTTCATCGTGATCGACCTTATTGTTTCCAACCTGCTGCTGGCGCTGGGTATGCAGATGGTCTCGCC
GATGACCATTTCCCTGCCGCTCAAGCTGCTGCTGTTCGTGCTGGTGTCTGGCTGGTCGCGGTTGCTCGACAGCCTGTTCC
TTTCTTATCTCTGA

Protein sequence : 
MILQGLDPVVLAVFLGALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAPVGYEIAENLK
ASPLDMTNVQTFLSTGNEAINPLRAFMLRNVDPDVLTHLLENTARLWPAKMAQEVQREDLILLIPAFVLSQLQAGFEIGF
LIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-63 71
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-63 71
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-63 70
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-66 69
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 8e-61 69
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-67 69
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-62 69
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-57 68
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-57 68
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-57 68
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-61 64
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-35 49
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-38 47
unnamed AAL06354.1 EscR Virulence LEE Protein 6e-36 46
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 9e-32 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 3e-37 45
escR AAC38369.1 EscR Virulence LEE Protein 3e-36 45
escR AAK26700.1 EscR Virulence LEE Protein 2e-37 45
escR AAL57527.1 EscR Virulence LEE Protein 2e-37 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-36 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-37 45
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-37 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-37 45
escR AAC31528.1 L0049 Virulence LEE Protein 2e-37 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-37 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-37 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 3e-37 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-36 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-36 45
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-31 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-31 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-32 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-31 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-30 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-30 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-30 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-30 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-30 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-32 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-32 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rscR YP_006322231.1 type III secretion protein RscR VFG0394 Protein 4e-39 48
rscR YP_006322231.1 type III secretion protein RscR VFG0044 Protein 3e-39 47
rscR YP_006322231.1 type III secretion protein RscR VFG0188 Protein 2e-38 47
rscR YP_006322231.1 type III secretion protein RscR VFG0827 Protein 1e-37 45
rscR YP_006322231.1 type III secretion protein RscR VFG0715 Protein 2e-36 45
rscR YP_006322231.1 type III secretion protein RscR VFG0519 Protein 2e-30 43
rscR YP_006322231.1 type III secretion protein RscR VFG2338 Protein 7e-24 43
rscR YP_006322231.1 type III secretion protein RscR VFG1773 Protein 4e-31 43
rscR YP_006322231.1 type III secretion protein RscR VFG2494 Protein 1e-25 42