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Name : rscV (PflA506_0696) Accession : YP_006322225.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type III secretion protein RscV Function : - COG functional category : - COG ID : - EC number : - Position : 813343 - 815436 bp Length : 2094 bp Strand : + Note : identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 DNA sequence : GTGACTCTGCTGTCGACCATCAATGGCTTACTGCTCAAAGTGGCACAGCGAGCTGAAGTGCTGGGCGCTGTGGTGGTCAT GGCCATTATCTTTATCTTTATCGTTCCACTGCCGACCTGGCTGGTAGATATTCTGATTGCTCTCAATATCTGCATATCTT GCCTGTTGATCGTACTGGCGCTTTATCTACCGGGCCCTTTGGCGTTCTCGTCGTTCCCGTCGATCCTGTTGTTGACCACT ATGTTTCGATTGGCGCTGTCGATCGCGACCACGCGCCTGATCTTGTTGGAACAGGACGCCGGTGACATCGTTGAGGCGTT CGGTAATTTTGTGGTGGGGGGAAACCTGGCGGTGGGGATGGTGATCTTCCTGATCCTGACCCTGGTCAACTTCCTGGTGA TCACCAAGGGTTCGGAGCGGGTTGCCGAGGTCGCGGCGCGATTTAGCCTGGATGCAATGCCGGGTAAGCAGATGTCTATC GACAGCGATTTGCGTGCCGGGTTGATTGACGGTGTGCAGGCGCGCGACAAACGCGATCAGCTGTCGCGTGAAAGCCAGCT GTTTGGGGCCATGGATGGCGCCATGAAGTTCGTCAAAGGCGACGCCATCGCCGGTTTGATCATCGTCGTGGTCAACCTCT TGGGCGGCTTCTCCACGGGCATGTTCCAGCACGGGTTGAGCGCTGCCGATTCCATTTCGTTGTATTCGGTGCTGACGATT GGCGATGGCCTGATAGCACAGATTCCAGCGCTGCTGATCTCTCTGACTGCGGGCATGATCATCACCCGCGTGGCGCCGGA TGGACGCAAAGGCGTCAGTAACATGGGCGTCGAAATTGCTCGGCAAATGACCAGCGAGCCCAAGAGCTGGGTGATTGCCT CGGTGGGAATGCTTGCGTTTGCCCTAGTGCCGGGCATGCCTACCCTGGTGTTTATTCTTATCGCGCTGATCACCGGCTGT GTGGGTTACTACCTGGTACGCCAGCGTCAACGACAGGCAGAGCCCGCCAACGAAGCCGCCGAGGTCGTTCGACCTGAAGA GAACGGTAAAGAGGACTTGCGCGGATTTGATCCGTCGCGCCCCTACCTGTTGCAGTTTTCCCCCGTGCTGCGCGGAACGC CTGAGGTGACGGACCTGATTCATGGGATTCGCCAGGCGCGAAACTCGCTGGTCGCCAATATCGGCCTGACATTGCCGCCG TTCGAAGTTGAACTCGATGATTCCCTGGCCGCCGATGAAATGCGCTTTTGCGTGCATGAGGTGCCCATGGTCAGGGCGTC AGTGGTCAACCATGTGGCTGTTGAGCGCAAGGCGCTGACGGTTGAGCCTGAGCACGCCATACCGGGGCTGGCTGAGCGGG ATGAACAGGATTGGCTCTGGTTGCCTCCTGATGACCCGCTGCTGGAGGACCCAGAGCTGGAGCGCTTCACGGCTACGCAC CTGATCCTGGAGCGCATGAGGCAGGCAATGATGCTTAGCGGGCCGCAGTTCCTGGGGATTCAGGAGAGCAAGTCGATCTT GAGTTGGCTTGAGCATAACCAGCCGGAACTGGTGCAGGAACTGCAGCGCATCATGCCGCTCTCGCGTTTTTCGGCGGTGT TGCAACGCCTGGCCAGTGAAGGCGTACCGCTGCGAGCAGTGCGGCTGATTGTCGAGTCGCTGATCGAGTACGGGCAGCAT GAGCGTGAGCCGGAAGCCCTGGCCGACTATGCGCGCATTGCCCTCAAGGCACAGATCTACCACCAGTACAGCGAGGCCGA TGGCCTGCATGCCTGGCTGTTATCTCCGCAGAGCGAAAACATCCTGCGCGAGGCGCTGCGCCAGACCCAGACCGGCGTGT TTTTCGCGCTGGACGAGAACCACAGCGCGGCCTTTATCAGTTTGCTCAACCAAGCCTTTGTTCTAAGGGCCAAGAGCAAA AGTGTGATGTTGGTGGCGCAAGACTTGCGCAGCCCATTGCGGACCTTGCTGCTGGAAGAGTTCAACCATGTACCGGTGCT GTCTTTCGCTGAGTTGGGAAGCACATCCAAGGTCAAGGTCCTGGGGCGCATAGACCTGGGCCAGGAAGCCTTGATGCGGG GGGCGGCGGCATGA Protein sequence : MTLLSTINGLLLKVAQRAEVLGAVVVMAIIFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSILLLTT MFRLALSIATTRLILLEQDAGDIVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGSERVAEVAARFSLDAMPGKQMSI DSDLRAGLIDGVQARDKRDQLSRESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSAADSISLYSVLTI GDGLIAQIPALLISLTAGMIITRVAPDGRKGVSNMGVEIARQMTSEPKSWVIASVGMLAFALVPGMPTLVFILIALITGC VGYYLVRQRQRQAEPANEAAEVVRPEENGKEDLRGFDPSRPYLLQFSPVLRGTPEVTDLIHGIRQARNSLVANIGLTLPP FEVELDDSLAADEMRFCVHEVPMVRASVVNHVAVERKALTVEPEHAIPGLAERDEQDWLWLPPDDPLLEDPELERFTATH LILERMRQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSAVLQRLASEGVPLRAVRLIVESLIEYGQH EREPEALADYARIALKAQIYHQYSEADGLHAWLLSPQSENILREALRQTQTGVFFALDENHSAAFISLLNQAFVLRAKSK SVMLVAQDLRSPLRTLLLEEFNHVPVLSFAELGSTSKVKVLGRIDLGQEALMRGAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 63 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 62 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 62 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 62 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 61 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 61 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 61 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 61 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 60 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 3e-116 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rscV | YP_006322225.1 | type III secretion protein RscV | VFG0064 | Protein | 2e-122 | 44 |
| rscV | YP_006322225.1 | type III secretion protein RscV | VFG0198 | Protein | 7e-106 | 41 |
