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Name : rspL (PflA506_0694) Accession : YP_006322223.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Unknown Product : RNA polymerase sigma factor RspL Function : - COG functional category : - COG ID : - EC number : - Position : 811466 - 812017 bp Length : 552 bp Strand : - Note : identified by similarity to GB:AAA91801.1; similarity to GB:AAK81917.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 DNA sequence : ATGAATATCCCTATTGAAGCCTTAGTTCACCTTGGTGGCAATTCGCCTCAATTCATGCTCCATCTGACAGACGATCAACA GAAAAAACTGCGGCGCTTCATTCACAAACGGGTCCTCAACCCGGAAGACGCGGATGATCTATTGCAACTGACTTACTTGG AGGCCTGGCGCAATCGCGAGCGCTTCAGTGGTACCGCGACGCTCAGCACCTGGATGTGCGGCATCGCGCAGAACCTGATC CGCAATCACTTCCGGCGCCTGTATGCCAAGCCCTCTCATTGCGAATTCGACGAGTCGCTGTGGCATGGCCATGAAGAAAA CCACAGCCTGGATTGGGAATTCGAGGTCAACCGACGCCTGGAAAATACCCTGAGCGCAATTGATCACTTGCCCACAGAGA TGCGCAGAACACTGTATGCCTCCCTGGAAACCGACGGCAGTTACCAGGACACCGCCGACGTACTGGACATTCCTATCGGC ACCGTGCGCTCGCGCCTGTCACGGGCACGCGAACAGCTCAAGCGCGTCACCCACACCCCACTGCATCAGTAA Protein sequence : MNIPIEALVHLGGNSPQFMLHLTDDQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGTATLSTWMCGIAQNLI RNHFRRLYAKPSHCEFDESLWHGHEENHSLDWEFEVNRRLENTLSAIDHLPTEMRRTLYASLETDGSYQDTADVLDIPIG TVRSRLSRAREQLKRVTHTPLHQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpL | ABQ88350.1 | HrpL | Virulence | Hrp PAI | Protein | 6e-32 | 50 |
| hrpL | AAA17652.1 | putative alternate sigma factor | Virulence | Hrp PAI | Protein | 6e-32 | 50 |
| hrpL | ABA47271.1 | HrpL | Virulence | S-PAI | Protein | 2e-31 | 50 |
| hrpL | NP_791231.1 | RNA polymerase sigma factor HrpL | Virulence | Hrp PAI | Protein | 7e-33 | 50 |
| hrpL | AAG33875.2 | HrpL | Virulence | Hrp PAI | Protein | 3e-32 | 49 |
| hrpL | AAT96137.1 | HrpL | Virulence | T-PAI | Protein | 2e-32 | 49 |
| hrpL | AAT96191.1 | HrpL | Virulence | T-PAI | Protein | 2e-32 | 49 |
| hrpL | AAT96335.1 | HrpL | Virulence | S-PAI | Protein | 5e-31 | 49 |
| hrpL | AAR25629.1 | RNA polymerase sigma factor HrpL | Not tested | Not named | Protein | 1e-26 | 48 |
| hrpL | AAD24681.1 | sigma factor HrpL | Virulence | Hrp PAI | Protein | 7e-25 | 47 |
