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Name : clpV1 (PflA506_5307) Accession : YP_006326693.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type VI secretion ATPase ClpV1 Function : - COG functional category : - COG ID : - EC number : - Position : 5809787 - 5812447 bp Length : 2661 bp Strand : + Note : identified by similarity to SP:Q9I742; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345 DNA sequence : ATGGGTGAAATCAGTCGCGCCGCACTGTTCGGCAAACTCAACAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTT CTGCAAATTACGGGGCAATCCGTATGTGGAACTGGCCCACTGGTTTCACCAGTTGTTGCAACTGCAGGACTCCGACCTGC ACCGCATCATCCGCCAGTTCAACGTGGAGCCGGCGCGCCTGGCCCGCGACCTCACCGAAGCCCTGGACCGCCTGCCGCGC GGCTCCACGTCGATCACCGACCTGTCCTCCCATGTGGAAGAGGCCGTAGAACGCGGCTGGGTGTATGGCAGCCTGATGTT TGGCGAAAGCCAGGTGCGCACCGGTTATCTGGTGCTGGGCATCTTGAAGACACCGAGCCTGCGCCATGCGCTGCTGGGCC TGTCCGGCGAGTTCGACAAGATCAAGGCCGAGGCCTTGAGCGAGCGCTTTGACGAATACGTCGGTGACTCGCCGGAAAAT GCCTTGAGCGCCAGCGACGGTTTCAATGCCGGTGTGCCAGGCGAGGCCAGCGGTGCCATGGCGCCCAGCGCGATGGGCAA GCAGGAAGCGCTCAAGCGTTTCACTGTGGACCTGACCGAACAGGCCCGCAGCGGCAAGCTCGACCCAATCGTGGGCCGTG ACGAGGAGATCCGACAACTGGTGGACATCCTCATGCGTCGGCGCCAGAACAACCCGATCCTTACCGGTGAAGCCGGGGTG GGCAAGACCGCCGTGGTCGAAGGTTTCGCCCTGCGCATCGTCGCCGGTGACGTGCCGCCCGCCTTGAAAGACGTGGAGCT GCGCAGCCTCGACGTGGGCTTGCTGCAAGCCGGCGCCAGCATGAAAGGCGAGTTCGAACAGCGCCTGCGCCAGGTCATCG AAGACGTGCAGGCCTCGCCCAAGCCGATCATCCTGTTTATCGACGAAGCCCATACCCTGGTGGGTGCCGGTGGCGCTGCC GGCACCGGTGACGCAGCCAACCTGCTCAAGCCTGCCCTGGCCCGTGGCACCTTGCGTACCGTGGCTGCCACCACCTGGGC CGAGTACAAAAAGCACATCGAGAAAGACCCGGCCCTGACCCGCCGCTTCCAAGTGGTGCAGGTTGCCGAACCGTCGGAAG ACAAGGCCCTGCTGATGATGCGCGGCGTGGCTTCCACCATGGAAAAACACCATCAGGTGCAGATCCTCGACGAAGCTCTT GAAGCCTCGGTGAAGCTCTCCCACCGCTATATTCCGGCGCGCCAGTTGCCGGACAAGTCCGTAAGCCTGCTGGACACCGC CTGCGCCCGCGTCGCTATCAGCTTGCACGCGGTACCAGCAGAAGTGGACGACAGCCGTCGGCGTATCGAGGCCCTGGAAA CCGAGTTGCAAATCATCGCCCGTGAGCATGCGATCGGCATTGCCATTGGTGCGCGTCAAACCAATAGCGAAGCGCTGCTG ACCGCCGAGCGTGAGCGTCTGGCCACGCTGGAAAGCCGCTGGGCTGAAGAGAAAGCCTTGGTGGATGAACTGCTCGCCAC CCGCGCAACCTTGCGCGAGAAAGCCGGTGTGGTGGACAGCGGCAACGATGAGTTGCGTGCGCAATTGGTCGACCTGCAAC AGCGCCTCACCGCCCTGCAAGGCGAAACCCCGTTGATCCTGCCGACCGTGGATTACCAGGCCGTGGCCTCGGTGGTCGCC GACTGGACCGGCATCCCGGTGGGCCGCATGGCGCGCAATGAGCTGGAAACTGTGCTCAACCTCGACCAGCACCTGAAGAA ACGCATCATCGGCCAGGACCATGCCCTGCAGATGATCGCCAAGCGCATCCAGACCTCCCGCGCCGGCCTCGACAACCCGA GCAAGCCGATTGGCGTGTTCATGCTGGCCGGCACCTCGGGTGTGGGCAAGACCGAAACCGCCCTGGCCCTGGCCGAAGCC ATGTATGGCGGTGAGCAGAACGTCATCACCATCAACATGAGCGAGTTCCAGGAAGCCCACACCGTGTCCACCCTCAAGGG CGCGCCACCGGGCTATATCGGCTACGGCGAAGGCGGTGTGCTGACCGAAGCGGTACGGCGCAAACCCTACAGCGTGGTGC TGCTCGATGAGGTGGAGAAAGCTCACCCGGACGTGCATGAGATCTTCTTCCAGGTGTTCGACAAGGGCGTGATGGAGGAC GGCGAGGGCCGGGTGATCGACTTCAAGAACACCTTGATCCTGCTGACCACCAATGCCGGGACAGAGCTGATATCCCAGGT GTGCAAAGACCCGGCGAACATCCCCGAGCCCGAGGAAATCGCCAAGGCCCTGCGCCAGCCACTGCTGGAGATTTTCCCGC CGGCCTTGCTCGGTCGCCTGGTGACCATCCCTTACTACCCGCTGAGCGACGAGATGCTCAAAGCGATCACGCGCCTGCAA CTGAACCGAATCAAGAAGCGCGTGGAGAACACCCATAAAGTCGCGTTCGAGTATGACGACGCAGTGGTCGTCCTGATCGT CTCGCGCTGCACCGAGACCGAAAGCGGCGGGCGCATGATCGACACCATCCTGACCAACAGCCTGCTGCCGGACATGAGCC GCGAGTTCCTCACGCGCATGTTGGAAGGCAAGGCACTGGCGGGGGTGCGGATCAGTAGTCGGGATAATGAACTGCACTAC GACTTCAGCGACACCGAATAA Protein sequence : MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLQDSDLHRIIRQFNVEPARLARDLTEALDRLPR GSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVLGILKTPSLRHALLGLSGEFDKIKAEALSERFDEYVGDSPEN ALSASDGFNAGVPGEASGAMAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAGV GKTAVVEGFALRIVAGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVIEDVQASPKPIILFIDEAHTLVGAGGAA GTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVAEPSEDKALLMMRGVASTMEKHHQVQILDEAL EASVKLSHRYIPARQLPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREHAIGIAIGARQTNSEALL TAERERLATLESRWAEEKALVDELLATRATLREKAGVVDSGNDELRAQLVDLQQRLTALQGETPLILPTVDYQAVASVVA DWTGIPVGRMARNELETVLNLDQHLKKRIIGQDHALQMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEA MYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMED GEGRVIDFKNTLILLTTNAGTELISQVCKDPANIPEPEEIAKALRQPLLEIFPPALLGRLVTIPYYPLSDEMLKAITRLQ LNRIKKRVENTHKVAFEYDDAVVVLIVSRCTETESGGRMIDTILTNSLLPDMSREFLTRMLEGKALAGVRISSRDNELHY DFSDTE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 0.0 | 53 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-132 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 5e-132 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpV1 | YP_006326693.1 | type VI secretion ATPase ClpV1 | VFG2076 | Protein | 0.0 | 88 |
| clpV1 | YP_006326693.1 | type VI secretion ATPase ClpV1 | VFG2084 | Protein | 2e-152 | 44 |
| clpV1 | YP_006326693.1 | type VI secretion ATPase ClpV1 | VFG0079 | Protein | 4e-106 | 41 |
