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Name : hcp1 (PflA506_5303) Accession : YP_006326689.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type VI secretion system effector Hcp1 Function : - COG functional category : - COG ID : - EC number : - Position : 5805855 - 5806343 bp Length : 489 bp Strand : + Note : identified by similarity to GB:AAG03475.1; match to protein family HMM PF05638; match to protein family HMM TIGR03344 DNA sequence : ATGGCTGTTGATATTTTCATCAAGATCGGCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAAATCGATGT GTTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTCGGCGGTGGCGGTGGCGCGGGCAAGGTGAATATCC AGGACCTGTCGCTGACCAAGTACGTCGACAAGGCTTCGCCCAACCTGATGATGCACTGCGCCAGCGGCAAGCACATCGAC AAGGTCAAGCTGACCGTGCGCAAGGCCGGTGGCGAGAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGT CACCTCCTTGAGCACCGGCGGTTCGGGCAGCGATGATCGCCTGACCGAAAACGTCACCCTGAACTTCGCCCAAGTGATGG TCGACTACCAGCCGCAGAAAGCCGACGGCACCAAAGACGGCGGCGCCATCAAGTTTGGCTGGAACATTCGCTCCAACACC AAACGCTGA Protein sequence : MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGGGGGAGKVNIQDLSLTKYVDKASPNLMMHCASGKHID KVKLTVRKAGGESQVEYMVINLEEVLVTSLSTGGSGSDDRLTENVTLNFAQVMVDYQPQKADGTKDGGAIKFGWNIRSNT KR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0302 | NP_454882.1 | conserved hypothetical protein | Not tested | SPI-6 | Protein | 1e-24 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hcp1 | YP_006326689.1 | type VI secretion system effector Hcp1 | VFG2071 | Protein | 6e-46 | 77 |
