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Name : tssC1 (PflA506_5302) Accession : YP_006326688.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type VI secretion protein TssC1 Function : - COG functional category : - COG ID : - EC number : - Position : 5804203 - 5805699 bp Length : 1497 bp Strand : + Note : identified by similarity to GB:AAG03474.1; match to protein family HMM PF05943; match to protein family HMM TIGR03355 DNA sequence : ATGACGGACAATACCGCCCGCGAAGGCAGCCAGATCCTGGGTACCACCGAAGAAGCCAGCGAGTTCGCGAACCTGCTGCT GCAAGAATTCAAACCCAAGACCGAGCGTGCCCGCGAAGCCGTTGAAACCGCGGTGCGCACCCTGGCTGAACAGGCCCTGG CGCAAACCGACCTGGTGTCCAACGACGCGATCAAGTCGATCGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCC CAGGTCAACCAGATCATCCACCACCAGGATTTCCAACAACTGGAAAGCGCCTGGCGTGGCCTGCATTACCTGGTCAATAA CACCGAGAGCGATGAGCAACTGAAGATTCGCGTGCTCAACATCTCCAAGCCAGACCTGCACAAGACCCTGAAGAAATTCA AGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGAAGATGTACGAAGAAGAATACGGCCAGTTCGGTGGCGAACCTTAC GGCTGCCTGGTGGGTGACTACTACTTCGACCAGTCGCCGCCCGACGTGGAACTGCTGGGCGAGCTGTCAAAAGTCTGCGC CGCCATGCACTCGCCTTTCATCGCTGCGGCCTCGCCGACCGTGATGGGCATGGGTTCGTGGCAGGAACTGTCGAACCCAC GCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAATCGGAAGACTCGCGCTACATC GGCCTGACCATGCCGCGCTTCCTGGCACGCCTGCCGTACGGCGCCAAGACCGACCCGGTAGAAGCCTTCGCCTTCGAAGA AAACACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCCTACGCCATGGCAGTGAACATCAACCGTTCGT TCAAGCACTACGGCTGGTGCTCGCGCATCCGCGGTATCGAGTCTGGTGGTGAAGTGGAAAACCTGCCGGCCCACACGTTC CCTACCGATGACGGTGGCGTGGACATGAAGTGCCCGACCGAAATCGCCATCAGTGACCGCCGTGAAGCGGAACTGGCGAA GAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATTGGCGCCCAGTCGCTGCAAAAGCCTG CCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCACGCCTGCCGTACCTGTTCGCCACCTGCCGTTTC GCCCACTACTTGAAGTGCATCGTGCGCGACAAGGTCGGCTCCTTCAAAGAGAAGGACGAAATGCAGCGCTGGTTGCAGGA CTGGATCCTCAACTACGTCGACGGCGACCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCATCCGTTGGCGGCGGCCG AAGTGATCGTGGAAGAAGTCGAAGGCAACCCGGGGTATTACAACTCCAAGTTCTACCTGCGCCCGCACTATCAGCTTGAA GGGCTGACGGTGTCGTTGCGCCTGGTATCGAAACTGCCTTCGGCAAAAAGCGCATAA Protein sequence : MTDNTAREGSQILGTTEEASEFANLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTA QVNQIIHHQDFQQLESAWRGLHYLVNNTESDEQLKIRVLNISKPDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPY GCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYI GLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHYGWCSRIRGIESGGEVENLPAHTF PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKVGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQLE GLTVSLRLVSKLPSAKSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 2e-80 | 41 |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 1e-80 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tssC1 | YP_006326688.1 | type VI secretion protein TssC1 | VFG2070 | Protein | 0.0 | 91 |
| tssC1 | YP_006326688.1 | type VI secretion protein TssC1 | VFG2093 | Protein | 2e-84 | 42 |
| tssC1 | YP_006326688.1 | type VI secretion protein TssC1 | VFG2475 | Protein | 2e-84 | 42 |
