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Name : choV (PflA506_4978) Accession : YP_006326366.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Unknown Product : choline ABC transporter ATP-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 5464558 - 5465736 bp Length : 1179 bp Strand : + Note : identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186; match to protein family HMM TIGR03415 DNA sequence : ATGAGCATTATCCGATTCGACAAAGTCGACGTGATCTTTTCCAAAGACCCACGCGAAGCGCTCAAGCTGCTGGACCAGGG CATGAGCCGTAACGAAATCCTGAAGAAGACCGGGCAGATCGTCGGCGTCGAGAACGCCAGCCTGGATATCGAGAAAGGCG AGATCTGTGTGCTGATGGGCCTCTCGGGCTCAGGCAAATCCAGTTTGCTGCGCTGCATCAACGGCCTCAATACCGTCAGC CGTGGCCAGCTGTTTGTGGAGCATGAAGGGCGTCAGATCGACATCGCCTCCTGCACCCCCGCCGAACTGAAAATGATGCG CACCAAACGCATCGCCATGGTGTTCCAGAAGTTCGCCCTGATGCCTTGGTTGACGGTGCGCGAGAACATCAGCTTCGGCC TGGAAATGCAGGGCCGACCGGAGAAAGAACGGCGCACGCTGGTGGACGAGAAACTCGAACTGGTGGGCCTGAGCCAATGG CGCAACAAGAAGCCCGACGAGTTGTCCGGCGGCATGCAGCAGCGCGTCGGCCTGGCCCGCGCCCTGGCGATGGACGCCGA TATCCTGCTGATGGACGAACCCTTCTCGGCCCTCGACCCGCTGATCCGCCAAGGCTTGCAAGATGAACTGCTGGAACTGC AACGCAAGTTGAGCAAGACCATCGTGTTCGTCAGCCACGACCTGGATGAAGCGCTGAAACTGGGCAGCCGTATCGCGATC ATGAAAGACGGCAAGATCATCCAGTACAGCGTGCCGGAAGAAATCGTACTGAACCCGGCAGACGACTATGTGCGCACCTT CGTCGCGCATACCAACCCGCTGAACGTGCTGTGCGGACGTAGCCTGATGCGCACGCTGGACAACTGCAAGCGCGTGAACG GTTCGGTGTGTCTTGATCCGGGTGGCGACTCCTGGCTGGACCTGGCCGAAGGCAACACCATCCAGGGCGCACGCCAGAAT GGCGTGGCGATGAACCTGCAAAACTGGGCGCCAGGGCAGGCTGTGGAAGGCTTGGGCCGCGTACCGACGCTGGTGGACTC GAACATCGGTATGCGCGATGCACTGCAGATTCGCTACCAGACAGGCAACAAGCTGGTGCTGCACGACAACAACAAGGTGG TGGGGATACTGGGGGACAGTGAGCTCTACCATGCCCTCTTAGGCAAGAACTTGGGCTAA Protein sequence : MSIIRFDKVDVIFSKDPREALKLLDQGMSRNEILKKTGQIVGVENASLDIEKGEICVLMGLSGSGKSSLLRCINGLNTVS RGQLFVEHEGRQIDIASCTPAELKMMRTKRIAMVFQKFALMPWLTVRENISFGLEMQGRPEKERRTLVDEKLELVGLSQW RNKKPDELSGGMQQRVGLARALAMDADILLMDEPFSALDPLIRQGLQDELLELQRKLSKTIVFVSHDLDEALKLGSRIAI MKDGKIIQYSVPEEIVLNPADDYVRTFVAHTNPLNVLCGRSLMRTLDNCKRVNGSVCLDPGGDSWLDLAEGNTIQGARQN GVAMNLQNWAPGQAVEGLGRVPTLVDSNIGMRDALQIRYQTGNKLVLHDNNKVVGILGDSELYHALLGKNLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| opuAA | YP_281521.1 | glycine betaine transport ATP-binding protein | Not tested | Not named | Protein | 6e-58 | 43 |
