Gene Information

Name : fliP (PflA506_3732)
Accession : YP_006325174.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4142624 - 4143367 bp
Length : 744 bp
Strand : -
Note : identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103

DNA sequence : 
ATGCGCGTTTTGTTGACGCTCATGCTGTTGCTGGCCGCACCGATGGCCCTGGGCGCCGACCCGTTGTCGATCCCGGCGAT
CACCCTGGGCACCAACGCGGCGGGCGCGCAGGAATATTCGGTCAGCCTGCAGATCCTGCTGATCATGACGGCGCTGAGTT
TTATCCCGGCGTTCGTCATGCTGATGACCAGCTTTACGCGGATCATCATCGTCTTCTCGATCCTGCGCCAGGCCCTGGGC
CTGCAGCAGACGCCATCGAACCAGATCCTCACCGGCATGGCGCTGTTTTTGACGCTGTTCATCATGGCGCCGGTGTTCGA
CAAGGTGAACCAGCAAGCCCTGCAACCTTATCTGGCGGAAAAGCTCACAGCCCAGGATGCCATCGACAAGGCTCAGGGCC
CGATCAAGGACTTCATGCTGTCGCAAACCCGCTCCAGCGACCTTGAGCTGTTCATGCGTCTGTCCAAGCGCACCGACATC
GCTACCCCGGACCAGGCGCCGCTGACTATTCTGGTGCCGGCGTTCGTCACCTCCGAACTGAAGACCGCGTTCCAGATTGG
CTTCATGATCTTCATCCCGTTCCTGATCATCGACCTGGTGGTGGCGAGCGTGTTGATGGCCATGGGTATGATGATGCTGT
CACCGTTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTTGTGCTGGTGGACGGCTGGGCGCTGATTATCGGCACCCTG
GCCGGCAGTTTCGGAGGGGTTTAG

Protein sequence : 
MRVLLTLMLLLAAPMALGADPLSIPAITLGTNAAGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALG
LQQTPSNQILTGMALFLTLFIMAPVFDKVNQQALQPYLAEKLTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLSKRTDI
ATPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTL
AGSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-31 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-30 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-30 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-30 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-33 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-34 42
escR AAL57527.1 EscR Virulence LEE Protein 2e-33 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-33 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-33 41
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-33 41
escR AAC31528.1 L0049 Virulence LEE Protein 2e-33 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-33 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-33 41
escR AAC38369.1 EscR Virulence LEE Protein 1e-32 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 41
escR AAK26700.1 EscR Virulence LEE Protein 2e-33 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG1259 Protein 5e-91 85
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-67 61
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-61 59
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG2494 Protein 5e-64 58
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG0519 Protein 4e-34 42
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG0044 Protein 3e-35 42
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG0188 Protein 4e-35 42
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG0394 Protein 5e-34 42
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG0827 Protein 9e-34 41
fliP YP_006325174.1 flagellar biosynthetic protein FliP VFG0715 Protein 7e-33 41