Gene Information

Name : PflA506_3038 (PflA506_3038)
Accession : YP_006324508.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3387314 - 3387997 bp
Length : 684 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGACCCGCATTTTGACCATCGAGGATGACGCCGTAACGGCCCGCGAGATTGTCGCCGAGCTGAGTAGCCATGGACTGGA
CGTAGATTGGGTGGACAACGGCCGCGAGGGCCTGGTCCGTGCCGTGAGTGGTGATTACGACCTGATCACCCTTGACCGCA
TGCTGCCCGAACTGGATGGCCTGGCCATCGTCACCACGTTACGCACTATTGGGGTGTCTACGCCGATCCTGATGATCAGC
GCCCTCTCCGATGTCGACGAGCGCGTGCGCGGCCTGCGTGCCGGCGGCGACGATTACCTGACCAAGCCGTTCGCCTCGGA
TGAAATGGCCGCCCGTGTCGAAGTGCTGCTGCGGCGTAAAAGTACGGTCCAGGAATTCGAAACCGCCCTGCGCGTGGCCG
ACCTGGAACTGAACCTGATCAGCCGCGAAGCCAGCCGCGCCGATCAACCGCTGACCCTGCTGCCCACTGAATACAAACTG
CTTGAATTCCTGATGCGCAACACCGGGCAGATCCTGTCGCGGATGATGATTTTCGAGGAAGTCTGGGGCTATCACTTCGA
CCCCGGCACCAACCTGATCGACGTGCACATCGGCCGTTTGCGCAAGAAAATCGACCCACCGGGCCTCACGCCGCTGATCC
GCACGGTACGAGGCTCGGGTTATGTCATTGCTGAACCCCTCTAA

Protein sequence : 
MTRILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLAIVTTLRTIGVSTPILMIS
ALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKSTVQEFETALRVADLELNLISREASRADQPLTLLPTEYKL
LEFLMRNTGQILSRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDPPGLTPLIRTVRGSGYVIAEPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-33 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_3038 YP_006324508.1 DNA-binding response regulator BAC0111 Protein 5e-43 46
PflA506_3038 YP_006324508.1 DNA-binding response regulator BAC0347 Protein 2e-40 45
PflA506_3038 YP_006324508.1 DNA-binding response regulator BAC0197 Protein 2e-39 45
PflA506_3038 YP_006324508.1 DNA-binding response regulator BAC0308 Protein 5e-40 44
PflA506_3038 YP_006324508.1 DNA-binding response regulator BAC0125 Protein 1e-38 44
PflA506_3038 YP_006324508.1 DNA-binding response regulator BAC0083 Protein 4e-41 42
PflA506_3038 YP_006324508.1 DNA-binding response regulator NC_012469.1.7686381. Protein 1e-37 41
PflA506_3038 YP_006324508.1 DNA-binding response regulator BAC0638 Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_3038 YP_006324508.1 DNA-binding response regulator VFG1390 Protein 4e-38 43
PflA506_3038 YP_006324508.1 DNA-binding response regulator VFG0596 Protein 2e-33 43
PflA506_3038 YP_006324508.1 DNA-binding response regulator VFG1389 Protein 1e-31 41