Gene Information

Name : PflA506_2968 (PflA506_2968)
Accession : YP_006324439.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3303633 - 3304334 bp
Length : 702 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCCCAACATCCTCCTGGTGGAAGACGACGCCGCACTCTCCGAGCTGATTGCCAGCTACCTGGAACGCAATGGCTACCA
CGTCAGCGTGCTCAGCCGTGGCGATCATGTACGCGAACGTGCACGCCTGAACCCGCCGGACCTTGTGATCCTCGACCTGA
TGCTGCCGGGCCTCGACGGCCTGCAGGTGTGCCGCTTGCTGCGCGCCGATTCTGCGGGCCTGCCGATCCTGATGCTGACC
GCCCGCGATGACAGCCACGACCAGGTTCTGGGCCTTGAGATGGGCGCCGACGACTACGTGACCAAACCCTGCGAGCCGCG
CGTATTGCTGGCCCGGGTGCGCACATTGCTGCGGCGCAGCAGCCTGTCCGAACCCCAGGTGGCCAGCGACCAGATCGTCA
TGGGCAACCTGTGCATCGACTTGTCCGAGCGCACCGTGACCTGGCGCGAACAGGCGGTGGAGCTGTCCAGCGGAGAATAC
AACCTGTTGGTGGTGCTGGCCCGGCATGCCGGCGAAGTGCTCAGCCGCGATCAGATCCTGCAACGCCTGCGCGGTATCGA
GTTCAACGGTACCGACCGTTCGGTGGACGTGGCCATCTCCAAGCTGCGGCGCAAGTTCGACGACCATGCGGGCGAGGCGC
GCAAGATCAAGACGGTGTGGGGCAAGGGGTATCTGTTCAGCCGTTCCGAGTGGGAATGCTGA

Protein sequence : 
MPNILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQVCRLLRADSAGLPILMLT
ARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLSEPQVASDQIVMGNLCIDLSERTVTWREQAVELSSGEY
NLLVVLARHAGEVLSRDQILQRLRGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWEC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_2968 YP_006324439.1 DNA-binding response regulator CP001918.1.gene3444. Protein 4e-32 43
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 3e-33 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator BAC0197 Protein 1e-20 42
PflA506_2968 YP_006324439.1 DNA-binding response regulator CP000034.1.gene3671. Protein 3e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_2968 YP_006324439.1 DNA-binding response regulator VFG1563 Protein 1e-32 41