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Name : tssC2 (PflA506_2409) Accession : YP_006323892.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type VI secretion protein TssC2 Function : - COG functional category : - COG ID : - EC number : - Position : 2624365 - 2625843 bp Length : 1479 bp Strand : + Note : identified by similarity to GB:AAG05047.1; match to protein family HMM PF05943; match to protein family HMM TIGR03355 DNA sequence : ATGACCACCATTCAACACGGCACGCAACCCGTACAGGTTATCGAAAGCGGTAGCATCCTCGATAACATCATTTCCCAGAC ATTGCTCAGCGCCGACGACGAGGCTTATGGCATCGCCAAGCGCGGCGTGTCGGCGTTTATCGCAGAGCTGGTCAAGCCAC ATAATTGTGACGAACCCGTAAAGAAACGCCTGGTCGACCGGATGATCGCCGAGATCGACACCAAGCTCAGCGAACAAATG GATGAGATCCTTCACCATCCGGACTTCCAGGCGTTGGAGGCTTCGTGGCGAGGCTTGCAGTTGCTGGTCGATCGCACCAA TTTTCGCGAGAACATCAAGATCGAACTGCTGAATGTTTCGCGCGAGGACCTGTTGGATGATTTCGAAGATTCATCGGAAA TTACCCAGTCCGGGTTATACAAGCACGTCTATAGCGCCGAATACGGTCAGTTCGGCGGTCAGCCAGTGGGCGCGATCATT GCCAATTACTTTCTTTCGCCCAGTGCGCCCGATGTGAAACTGATGCAATACGCATCCAGCGTCGCCGGCATGGCCCACGC GCCCTTTATCGCTGCAGCGGGGCCAAGTTTCTTCGGCTTGGAAAGCTTCACCGGGTTGCCCGACCTGAAGGATCTGCGGG ACCATTTCGAAGGCCCGCAGTTTGCCAAATGGCAAAGTTTCCGGCAGAGCGAAGACGCACGATATATTGGCCTCACCGTG CCGCGCTTTTTGCTGCGCACCCCGTATGACCCCCTTGAGTGCCCGGTCAAGACCTTCGCCTACCAGGAGAACGTGGTTAA CAGCCACGAGCATTACTTGTGGGGCAATACCGCCTATGCCTTTGCCACTCGCCTGACCGACAGCTTCGCGCGCTTTCGCT GGTGCCCCAACATTATTGGCCCGCAAAGCGGCGGGGCGGTCGAAGACCTGCCGCTGCATCACTTCCAGAGCATGGGCGAG ATTGAAACCAAGATTCCTACGGAGGTGCTGATTTCGGACCGACGTGAGTACGAGCTGGCACAAGAAGGTTTCATCGCCTT GACCATGCGCAAGGGCAGCGATAACGCAGCGTTTTTTTCCGCCAGCTCCGTGCAGAAGCCCAAATCGTTCGGCATCAGTG AGGAGGGCAAGGCGGCAGAGCTGAATTACCGCTTGGGCACCCAATTGCCCTACATGATGGTGGTCAACCGCCTGGCTCAT TACCTCAAAGTGCTGCAACGGGAGCAGTTGGGCGCGTGGAAAGAGCGGACGGACCTGGAGTTGGAGCTCAATAAATGGGT TCGCCAATACGTGGCGGACCAGGAAAATCCCAGTGCCGAGGTGCGCGGGCGGCGCCCCTTGCGCGCTGCGCGCATTGTCG TCAGCGATGTCGAGGGCGAGCCTGGCTGGTACCGGGTCAACGTTACGGTACGCCCGCATTTCAAATACATGGGGGCAGAC TTCACGTTGTCCCTGGTCGGGAAGCTCGATAAAGAATGA Protein sequence : MTTIQHGTQPVQVIESGSILDNIISQTLLSADDEAYGIAKRGVSAFIAELVKPHNCDEPVKKRLVDRMIAEIDTKLSEQM DEILHHPDFQALEASWRGLQLLVDRTNFRENIKIELLNVSREDLLDDFEDSSEITQSGLYKHVYSAEYGQFGGQPVGAII ANYFLSPSAPDVKLMQYASSVAGMAHAPFIAAAGPSFFGLESFTGLPDLKDLRDHFEGPQFAKWQSFRQSEDARYIGLTV PRFLLRTPYDPLECPVKTFAYQENVVNSHEHYLWGNTAYAFATRLTDSFARFRWCPNIIGPQSGGAVEDLPLHHFQSMGE IETKIPTEVLISDRREYELAQEGFIALTMRKGSDNAAFFSASSVQKPKSFGISEEGKAAELNYRLGTQLPYMMVVNRLAH YLKVLQREQLGAWKERTDLELELNKWVRQYVADQENPSAEVRGRRPLRAARIVVSDVEGEPGWYRVNVTVRPHFKYMGAD FTLSLVGKLDKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 2e-156 | 62 |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 2e-156 | 62 |
| HH0247 | NP_859778.1 | hypothetical protein | Not tested | HHGI1 | Protein | 2e-150 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tssC2 | YP_006323892.1 | type VI secretion protein TssC2 | VFG2093 | Protein | 1e-176 | 68 |
| tssC2 | YP_006323892.1 | type VI secretion protein TssC2 | VFG2475 | Protein | 1e-164 | 65 |
| tssC2 | YP_006323892.1 | type VI secretion protein TssC2 | VFG2070 | Protein | 4e-83 | 41 |
