|
Name : PflA506_2400 (PflA506_2400) Accession : YP_006323883.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Unknown Product : peptide ABC transporter, ATP-binding protein, YejF family Function : - COG functional category : - COG ID : - EC number : - Position : 2614192 - 2615763 bp Length : 1572 bp Strand : - Note : identified by similarity to SP:P33916; match to protein family HMM PF00005; match to protein family HMM PF08352 DNA sequence : ATGAACCTGATCGAAATCCGCGACCTGTGCGTCGCCTTCAACGGCCAGACCGTCGTGCGCAACCTGAGCCTGGACGTGCG CCCTGGCGAGTGCCTGGCGCTGGTGGGCGAGTCGGGCTCGGGCAAGTCGGTGACGGCCCACTCTATCTTGCAACTGCTGC CGCAAGCCAGCACCGAAACCCTGGGTTCGATCAAGTATCGCGGCCAGGAACTGATCGGCGCCTCACCGAGTACCTTGCAA AAATTGCGCGGCAACCGCATTGCCATGATCTTCCAGGAGCCGATGACCTCCCTGAACCCCCTGCACAGCATCGAAAAGCA GATCGGCGAAACCCTGCTGCTGCACAAGGGCCTGGGCGGCAAGGCGGCGCAGGCGCGCATCCTCGAACTGCTGGAACTGG TGGGCATCCAGAAACCCCAGGAACGGCTCAAGGCCTACCCCCATCAATTGTCCGGCGGCCAGCGCCAGCGGGTGATGATC GCCATGGCCCTGGCCTGCGAGCCCGAACTGCTGATTGCCGACGAGCCCACCACGGCGCTGGACGTGACGGTGCAGCGCAA GATCCTGCTGCTGCTCAAGTCCTTGCAACAACGCCTGGGCATGTCGCTGCTGCTGATCAGCCATGACCTCAACCTGGTAC GCAGTATCGCCCAGCGGGTCTGCGTGATGCGTGCCGGGGAAATCGTCGAGCAGGCCGACTGCCAGGCCTTGTTCACCGCC CCCCAGCATCCCTACAGCCGCCTGCTGCTGGATGCCGAGCCCTCGGGCGACGTGCTGTGCAGCGAGCCGCGTGACACGGT ACTGGAAGTGGACGACCTGAGCGTGCAATTCCCTCTCGGTGGCGGACTGTTCCGGGCCAAGACCTACCTGCGCGCAGTGG ACGGCATCAGCCTCAGCGTGCAGCGCGGCAAGACCCTGGGGATTGTCGGCGAGTCCGGCTCCGGCAAGTCCACCCTGGGC CAGGCGATCCTGCGCTTGCTCGACTCCAGCGGCAGCATCCGCTTTCAGGGTGAAGCTCTGGACCCGCTCAACCATCAGCA GATGCGCCCATGGCGCAAGCAGATGCAGGTGGTGTTCCAGGACCCCTATGGCAGCCTCAGCCCGCGCATGTCGGTGCAGC AGATCATCAGCGAGGGCCTGGAAGTGCATGCCCCGTGCAGCCTGGCCGACCGCGATGCGCAAGTGGTCCAGGTGCTCAAG GACGTGGGCCTCGACCCTGCCAGCCGACATCGCTACCCCCATGAGTTTTCCGGTGGCCAGCGCCAACGCATCGCCATTGC CCGCGCCCTGGTACTCAAGCCAGCGCTGATGCTGCTCGACGAACCCACCTCGGCCCTGGACCGTACGGTGCAGAAACAAG TGGTGGCGCTGCTGCGCGAACTGCAGGACAAATACGGCCTGACCTACCTGTTTATCAGCCATGACCTGGCGGTGGTGCGC GCCATGGCCCATGACATGATCGTGGTCAAGGATGGCAAGGTGGTGGAGCGTGGCGCGAGCCATGAGGTGTTCGAATCGCC CCAACACCCGTACACCAAAGAACTGCTGGCAGCAGCGCACATCCCTTTGTAG Protein sequence : MNLIEIRDLCVAFNGQTVVRNLSLDVRPGECLALVGESGSGKSVTAHSILQLLPQASTETLGSIKYRGQELIGASPSTLQ KLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLLHKGLGGKAAQARILELLELVGIQKPQERLKAYPHQLSGGQRQRVMI AMALACEPELLIADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMRAGEIVEQADCQALFTA PQHPYSRLLLDAEPSGDVLCSEPRDTVLEVDDLSVQFPLGGGLFRAKTYLRAVDGISLSVQRGKTLGIVGESGSGKSTLG QAILRLLDSSGSIRFQGEALDPLNHQQMRPWRKQMQVVFQDPYGSLSPRMSVQQIISEGLEVHAPCSLADRDAQVVQVLK DVGLDPASRHRYPHEFSGGQRQRIAIARALVLKPALMLLDEPTSALDRTVQKQVVALLRELQDKYGLTYLFISHDLAVVR AMAHDMIVVKDGKVVERGASHEVFESPQHPYTKELLAAAHIPL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 3e-94 | 43 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-80 | 42 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-80 | 42 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 5e-80 | 42 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 5e-80 | 42 |
