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Name : topB_1 (PflA506_2126) Accession : YP_006323613.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : 5.99.1.2 Position : 2295020 - 2296969 bp Length : 1950 bp Strand : - Note : identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056 DNA sequence : ATGCGGCTGTACCTCTGTGAAAAACCCTCCCAGGCCAAGGATATCGCGGCTGTGCTTGGCGCCAGCCGCCGTGGCGATGG GTGCTGGCTGGGTAATGGAGTCACGGTCACCTGGTGCATCGGCCACCTGCTGGAAACCGCCCCGCCCGACGCCTACGACG CCAAATACAAACGCTGGGTGCTGGCCGACCTGCCGATCGTCCCGGAAAAATGGAAGATGCTGGTCAAGCCCAAGACCGCC AGCCAATACAAGGCCGTCAAGCGCTTGCTGGGCGAAGCCCAGGAACTGGTGATCGCCACCGACGCCGACCGTGAAGGCGA GATGATCGCCCGTGAACTGGTAGAACACTGCCGCTACCGCGGGCCGATCCAGCGGCTGTGGTTGTCGGCGCTCGACGACG CCTCCATTCGCAAGGCCCTGGCGGCGCTCAAACCCGGTGCAGAAACCTTCAGCCTGTATCATTCGGCCCTGGGGCGCTCG CGTGCGGACTGGCTGATCGGCATGAACATGAGCCGCCTGTTTACCCTGCTGGGGCGCCAATCCGGTTACCAGGGCGTGCT GCCGGTAGGCCGCGTGCAAACCCCGACCCTGCGCCTGGTGGTGGACCGTGATCGCAGCATTGCCGACTTCGTGCCGGTGG CCTATTGGGCCATTGATGTCGACCTGCGTCACGAGCACATGACCTTCACCGCCCAATGGCGCGCCCCTGACGATGCCTGT GACGACCAGGACCGTTGCCTCAACCCGCAACTGGCGCGGGACGCCGCCGACGCCATGCTCAACGCCGCCACGGCGCGACT GGTGAAACTGCGTACCGAGCGCATGCGCGAAGTGGCGCCCCTGCCCTTCGACCTCGGCACCTTGCAGGAGATCTGTTCGA AGAAGCTCGGCCTGGGCGCCCAGGAAACCCTGGACATCGCTCAATCCCTGTACGAAACCCACAAGGCCATCACCTACCCG CGCAGCGATTGCGGCTACCTGCCGTTGAGCCAGCACAGTGAAGCGCCGAAGATTCTTGCGGCGCTGGGCCGTGCGGACAC GGCGGTCAACGAGCTGATGTCGCACATCGACCCTCGGCGCCGTTCGCGGGCCTGGAACGACGCGAAAGTCAGCGCCCACC ACGGCATCATCCCCACCGGAGCCGGCAAGGAGGTCAGCCAACTGACCGGCAAGCACCGTGCGGTCTATACGCTGATTCGT GCGCGCTACCTGGCGCAGTTCCTGCCCAACCATGAATACGACCGCACCCAGGCCGATTTGGACTGTGCCGGCCACGCGTT GCGCGCGGTGGGCAAAGTCATCATCGAACCGGGCTGGAAACGCGCCTTGCCCGAAGCGCTGGCACCCGCCAAAGGTCGCG AAGCCCCTGCGCCCCAAGCGTTGCCGACGCTGGTGCAGGGCCACGACTACGCCGTGGCCAAGGTCAACCTCAAGGACCTG TGGACCCAGCCGCCCAAGCCCTTTACCGAAGGCGACCTGATCAAGGCCATGAAAAACGTCGCCAAGCTGGTGGAGGACCC GTTGCTCAAGCAAAAACTCAAGGACACCACTGGCATCGGCACCGAGGCCACCCGCGCCGGGATCATCCAGGGCTTGCTGG ACCGCGGTTATCTGGTGAAAAACGGCAAGGCCCTGTCGGCAACCCCGGCCGCGTTCAGCCTGATTGACGCAGTGCCCCGC GCCATCGCCGACCCCGGCACCACCGCCATCTGGGAACAGGCGCTGGACATGGTGCAAAGCGGCGAAATGAGCCTGGAGGA ATTCATCGCCAAGCAAGCGGCGTGGATGAGCAAGCAGGTGGCACGCTGTAACGGCATGCGCATGACTATCACTGGCCCCG CCAGCCCGGCTGGACGAGGTGCAACGCCCTGGAAAAAGAAACGCAAGGCCGCCCCGCGCAAGGCCGGCGCCAGCCCCAAA CGCGGGAAAAAGCCGGTAAATGCGGGATAG Protein sequence : MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDAKYKRWVLADLPIVPEKWKMLVKPKTA SQYKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRS RADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLRHEHMTFTAQWRAPDDAC DDQDRCLNPQLARDAADAMLNAATARLVKLRTERMREVAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKAITYP RSDCGYLPLSQHSEAPKILAALGRADTAVNELMSHIDPRRRSRAWNDAKVSAHHGIIPTGAGKEVSQLTGKHRAVYTLIR ARYLAQFLPNHEYDRTQADLDCAGHALRAVGKVIIEPGWKRALPEALAPAKGREAPAPQALPTLVQGHDYAVAKVNLKDL WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR AIADPGTTAIWEQALDMVQSGEMSLEEFIAKQAAWMSKQVARCNGMRMTITGPASPAGRGATPWKKKRKAAPRKAGASPK RGKKPVNAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 62 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 62 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 61 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 9e-148 | 49 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-147 | 49 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-147 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-149 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-144 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 3e-112 | 43 |
