Gene Information

Name : copR (PflA506_1589)
Accession : YP_006323096.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : DNA-binding copper response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1757900 - 1758580 bp
Length : 681 bp
Strand : -
Note : identified by similarity to SP:Q02540; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGAAACTGCTGATCGTCGAAGACCAACCCAAAACCGGTCATTACCTGCGTCAGGGCCTGGCCGAAGCGGGCTTTACCAC
CGAACTGGTGGCCGACGGCACCAGTGGCCAGCACTTGGCGCTAACGGGCGACTATGACTTGTTGATCCTCGATGTGATGC
TGCCCGGCCGCGATGGCTGGCAAATCCTGCAGGCGGTGCGCAGTGCCGGCCTGGACATCCCGGTGCTGTTCCTCACCGCT
CGCGATGCCGTAGAAGACCGAGTACATGGCCTGGAGCTGGGCGCCGACGATTACCTGGTCAAACCCTTCGCGTTTTCCGA
ACTGCTGGCGCGGGTGCGCACCTTATTGCGCCGTGGCAGCAGCACGCCGCAGGAGACCACGCTGCAACTGGCCGACCTGA
GCCTGGACTTGATCCGCCGGCGCGTCGAGCGCAGCGGCCAGCGCATCGACCTCACCGCCAAGGAGTTCGCCTTGCTGGAG
CTGCTGCTACGCCGCCAGGGCGAAGTGCTGCCCAAGACGCTGATCGCCTCCCAGGTGTGGGACATGAATTTCGACAGCGA
CACCAACATCATCGAAGTTGCCATTCGCCGCCTGCGCCTGAAAGTCGATGACCATTTCCCCAATAAGCTGATCCACACCG
TGCGCGGCATGGGTTACGTGCTGGAGGAACGGTTCACGTGA

Protein sequence : 
MKLLIVEDQPKTGHYLRQGLAEAGFTTELVADGTSGQHLALTGDYDLLILDVMLPGRDGWQILQAVRSAGLDIPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRTLLRRGSSTPQETTLQLADLSLDLIRRRVERSGQRIDLTAKEFALLE
LLLRRQGEVLPKTLIASQVWDMNFDSDTNIIEVAIRRLRLKVDDHFPNKLIHTVRGMGYVLEERFT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-58 58
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-57 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_006323096.1 DNA-binding copper response regulator BAC0083 Protein 5e-76 71
copR YP_006323096.1 DNA-binding copper response regulator BAC0638 Protein 6e-70 70
copR YP_006323096.1 DNA-binding copper response regulator BAC0111 Protein 5e-72 66
copR YP_006323096.1 DNA-binding copper response regulator BAC0197 Protein 8e-70 66
copR YP_006323096.1 DNA-binding copper response regulator BAC0308 Protein 2e-67 63
copR YP_006323096.1 DNA-binding copper response regulator BAC0125 Protein 3e-66 61
copR YP_006323096.1 DNA-binding copper response regulator BAC0347 Protein 8e-65 60
copR YP_006323096.1 DNA-binding copper response regulator NC_002516.2.879194.p Protein 4e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_006323096.1 DNA-binding copper response regulator VFG0596 Protein 2e-58 58
copR YP_006323096.1 DNA-binding copper response regulator VFG1390 Protein 5e-42 44
copR YP_006323096.1 DNA-binding copper response regulator VFG1389 Protein 5e-33 41