Gene Information

Name : lolD (PflA506_1586)
Accession : YP_006323093.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : lipoprotein-releasing system, ATP-binding protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1754442 - 1755140 bp
Length : 699 bp
Strand : +
Note : identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211

DNA sequence : 
ATGAGTGAATCGGGCATGAGTGAAAAAGCAATCCTGAGCTGCCGCAACCTGGGCAAATCCTACGAGGAAGGCCCGGAGTC
GGTGGTGGTGCTGTCCAACCTGCAGCTTGAACTGCACCCTGGCGAGCGCGTGGCGATCGTCGGCAGTTCCGGTTCCGGCA
AGAGTACCTTGCTCAACCTGTTGGGCGGCCTCGATACGCCGTCCCAGGGCAGCGTATGGCTGGCTGGCGAAGAACTGTCG
GCGTTGAATGAAAAGGCCCGCGGCCAACTGCGTAACCGCTCGTTGGGCTTTGTGTACCAGTTCCACCACTTGCTGCCGGA
ATTCACCGCCCTGGAAAACGTGTGCATGCCGCTGTTGATCGGCAAGACCGCGATTCCTGAAGCGCGTCAGCGTGCCACGG
CCTTGCTCGAACGCGTCGGCCTGGGCCACCGCCTGGAGCACAAGCCAGCGGAGTTGTCCGGTGGTGAGCGCCAGCGCGTG
GCGATTGCTCGTGCCCTGGTGAACAACCCGGGCCTGGTGATGCTCGACGAGCCGACCGGCAACCTCGACTCCCACACCGC
CCAGGGCATCAAGGACTTGATGCTGGAACTGAGCACCCAGATGCGCACCGCGTTCCTGGTGGTGACCCATGACATGAGCA
TGGCCCGGCAGATGGACCGTGTACTGCATTTGCAGGAAGGTCATCTGGTCGCTATCTGA

Protein sequence : 
MSESGMSEKAILSCRNLGKSYEEGPESVVVLSNLQLELHPGERVAIVGSSGSGKSTLLNLLGGLDTPSQGSVWLAGEELS
ALNEKARGQLRNRSLGFVYQFHHLLPEFTALENVCMPLLIGKTAIPEARQRATALLERVGLGHRLEHKPAELSGGERQRV
AIARALVNNPGLVMLDEPTGNLDSHTAQGIKDLMLELSTQMRTAFLVVTHDMSMARQMDRVLHLQEGHLVAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-27 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_006323093.1 lipoprotein-releasing system, ATP-binding protein LolD NC_012469.1.7686878. Protein 2e-39 44
lolD YP_006323093.1 lipoprotein-releasing system, ATP-binding protein LolD NC_008702.1.4606598. Protein 4e-34 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_006323093.1 lipoprotein-releasing system, ATP-binding protein LolD VFG2059 Protein 4e-15 42