Gene Information

Name : CDCO157_A0016 (CDCO157_A0016)
Accession : YP_006315916.1
Strain :
Genome accession: NC_017907
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 14733 - 15554 bp
Length : 822 bp
Strand : +
Note : -

DNA sequence :
GTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGGCAGACGGGCTGTATTACG
CAGTCAGGTACTTGAGTTGCATAACATCAGCCATGGTTCTGCCGGGGCAAGAAGCATCGCCACAATGGCAACCCTGAGAG
GCTTCAGAATGGGGCGCTGGCTTGCCGGCAGGCTCATGAAAGAACTGGGACTGGTCAGTTGCCAGCAGCCTGCGCACCGT
TATAAACGAGGTGGTCGTGAACATGTCACTATCCCGAATCACCTTGGGCGGCAGTTCGCAGTGACAGAGCCAAATCAGGT
ATGGTGCGGCGACGTGACGTACATCTGGACGGGGAAACGTTGGGCATACCTTGCCGTTGTTCTCGACCTGTTTGCAAGGA
AACCGGTAGGTTGGGCAATGTCGTTCTCTCCGGACAGCAGACTGACCATCAAAGCGCTGAAAATGGCCTGGGAAATCCGC
AGTAAACCAGCCGGGGTAATGTTCCACAGCGATCAGGGCAGCCACTATACAAGCAGGCAGTTCCGGCAGTTACTGTGGCG
TTACCAGATCAAACAGAGTCTGAGTCGACGAGGAAATTGCTGGGATAACAGCCCGATGGAGCGCTTCTTCAGGAGTCTGA
AAAACGAGTGGATACCGGTGACGGGTTACATGAACTTCAGCGATGCTGCCCATGAAATAACGGACTATATCGTTGGGTAT
TACAACGCGCTCAGGCCGCACGAATATAACGGTGGGTTGCCACCAAATGAATCGGAAAACCGATACTGGAAAAACTCTAA
AGCGGTGGCCAGTTTTTGTTGA

Protein sequence :
MFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHNISHGSAGARSIATMATLRGFRMGRWLAGRLMKELGLVSCQQPAHR
YKRGGREHVTIPNHLGRQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTIKALKMAWEIR
SKPAGVMFHSDQGSHYTSRQFRQLLWRYQIKQSLSRRGNCWDNSPMERFFRSLKNEWIPVTGYMNFSDAAHEITDYIVGY
YNALRPHEYNGGLPPNESENRYWKNSKAVASFC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 2e-105 100
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 2e-105 100
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 8e-93 67
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-93 67
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-93 67
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-93 67
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-93 67
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-92 67
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 8e-93 67
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-92 67
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 7e-67 63
unnamed AAC31485.1 L0006 Not tested LEE Protein 6e-67 63
Z5089 NP_290241.1 transposase Not tested LEE Protein 1e-67 62
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 8e-68 62
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-66 60
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-66 60
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 2e-69 60
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-61 55
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 3e-37 41
tnpB CAB61574.1 transposase B Not tested HPI Protein 5e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_A0016 YP_006315916.1 hypothetical protein VFG1484 Protein 9e-106 100
CDCO157_A0016 YP_006315916.1 hypothetical protein VFG1122 Protein 5e-93 67
CDCO157_A0016 YP_006315916.1 hypothetical protein VFG0785 Protein 5e-68 62