Gene Information

Name : CDCO157_4960 (CDCO157_4960)
Accession : YP_006315818.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : protein FimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5287023 - 5287697 bp
Length : 675 bp
Strand : +
Note : -

DNA sequence : 
TTGCTGGCAGGTATCCTGATGTTCATGGCAATGATGGTTGCCGGACGCGCTGAAGCGGGAGTGGCCTTAGGTGCGACTCG
CATAATTTATCCGGCAGGGCAAAAACAAGTGCAACTTGCCGTGACAAATAATGATGAAAATAGTACCTATTTAATTCAAT
CATGGGTGGAAAATGCCGATGGTGTAAAGGATGGTCGTTTTATCGTGACGCCTCCTCTGTTTGCGATGAAGGGAAAAAAA
GAGAATACCTTACGTATTCTTGATGCAACAAATAACCAATTGCCACAGGACCGGGAAAGTTTATTCTGGATGAACGTTAA
AGCGATTCCGTCAATGGATAAATCAAAATTGACTGAGAATACGCTACAGCTCGCAATTATCAGCCGCATTAAACTGTACT
ATCGTCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACG
CTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAGCCCGGGTTCTTGAAAATGCCTTGGTGCC
TCCAATGGGCGAAAGCACGGTTAAATTGCCTTCTGATGCGGGAAGCAATATTACTTACCGAACAATAAATGATTATGGTG
CACTTACCCCCAAAATGACGGGCGTAATGGAATAA

Protein sequence : 
MLAGILMFMAMMVAGRAEAGVALGATRIIYPAGQKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKK
ENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLT
LINPTPYYLTVTELNAGARVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 1e-83 84
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-70 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_4960 YP_006315818.1 protein FimC VFG0875 Protein 3e-101 98
CDCO157_4960 YP_006315818.1 protein FimC VFG1644 Protein 1e-70 66
CDCO157_4960 YP_006315818.1 protein FimC VFG0911 Protein 9e-71 66
CDCO157_4960 YP_006315818.1 protein FimC VFG0445 Protein 6e-53 49