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Name : CDCO157_4403 (CDCO157_4403) Accession : YP_006315265.1 Strain : Escherichia coli Xuzhou21 Genome accession: NC_017906 Putative virulence/resistance : Virulence Product : putative outer membrane usher protein Function : - COG functional category : - COG ID : - EC number : - Position : 4627619 - 4630153 bp Length : 2535 bp Strand : - Note : - DNA sequence : ATGGCCTCTTCGCATCTTTTCATTACGCTTGCATCGGGCATATGTCTGCTCTGTTCCATATCTGCTTTTGCCCGGGATAG CTTGTTCAACCCCAGATTACTGGAACTGGATCATCCTGCGGATAATATTGATATTCACCAGTTCAACCGTTCGAATACCT TACCTGCGGGAACATACAAAGTTGATGTGATGATCAACGGCATGCTCTTCGAACGCCAGGAAGTTAAATTCGCCCAGGAT AACCCTGATGCTGAACTCCACCCATGCTACGTGGCGATAAAAAACGTGCTGGCGACCTATGGTATAAAAGTTGATGCGAT AAAATCTCTGGCGAATGTTGATGACAAAACATGCGTAAATCCAGTTCCGCTGATCGACGGGGCTACCTGGTTACTGGACG CCAGTAAACTTGCATTGAATATTACTATTCCGCAAATTTATCTCAACAATGCAGTTAATGGTTATATCAGCCCTTCCCGT TGGGATCAGGGGATCAATGCCATGATGATGAATTATGATTTTTCGGCATCGCATACCATCCGGTCAAATTATGACGACGA CGATGACAGTTATTATCTGAATTTGCGTAATGGTATTAATTTAGGCGCATGGCGTTTTCGTAATTACAGCACCCTGAATT CTTATGACGGTAATGTGGACTACCATTCCGTCAGTAATTACATTCAGCGCGACATCATGGCATTACGTAGCCAGATTATG ATTGGCGATACCTGGACGGCAAGCGATGTATTTGATAGTACACAGGTGCGTGGCGTGCGGCTGTATACCGATGACGATAT GTTGCCCTCCAGCCAGAACGGCTTTGCGCCAGTGGTACATGGGATTGCGAAAACTAACGCCACGGTGATCATCAAACAAA ACGGCTACGTTATTTATCAATCAGCCGTACCACAGGGCGCATTTGCCCTCACCGACTTAAACACGACCAGTAGCGGCGGC GATCTCGATGTCACTATCAAAGAAGAAGATGGCAGCGAGCAGCACTTTATTCAGCCATTTACTTCACTGGCCATTCTCAA GCGTGAAGGTCAGACCGATGTAGACCTTAGCATTGGAGAAGTGCGCGACGAAAGCGGCTTTACGCCTGAGGTCTTGCAGT TACAAGCAATGCACGGTTTCCCTTTGGGAATAACTTTGTATGGCGGAACACAATTGGCAAATGATTACGCTTCTGCCGCG CTGGGTATTGGTAAAGATATGGGGGCGCTGGGCGCGATTTCTTTTGACGTGACTCATGCCCGCTCGCAGTTTGACTACGA CGATAATGAGAGTGGTCAATCGTATCGTTTTCTCTATTCCAAACGTTTTGAAGACACCAATACCACCTTTCGTCTGGTGG GTTATCGCTACTCTATGGAGGGGTTCTACACCCTCAATGAATGGGTGTCGCGACAGGATAATGATTCTGATTTCTGGGTA ACGGGCAACCGTCGCAGCCGCTTCGAAGGCACCTGGACGCAATCTTTCACGCCAGGCTGGGGCAATATTTATTTAACATT CAGTCGACAGGAATACTGGCAGACCGATGAGGTCGAACGTTTATTACAGTTCGGCTATAACAACAACTGGCGAAACATCT CCTGGAACGTTTCCTGGAACTATACGGACTCGATCAAGCGCTCATTGGGCAACCATCATGATGATAACAATGATGATTTC GGCAAAGAACAGATTTTCATGTTCTCAATGTCGATACCGCTATCGTGCTGGATGGAAGACAGCTACGTCAACTATTCGTT AACGCAAAACAACCACCATGAAAGCACGATGCAGGTCGGTCTGAACGGAACGATGCTGGAAGGGCGTAACCTGTCTTATA ACGTACAGGAATCGTGGATGCACTCTCCTGATGACTCCTACAGCGGCAATGCCGGAATGACCTATGACGGGACTTATGGC TCGGTCAATGGTAGCTATTCCTGGAGCCGTGACTCCCAACATTTTGATTATGGCGCCAGAGGCGGCGTGCTGGTGCATAG TGACGGAGTGACCTTCTCGCAGGAACTGGGCGAAACGGTGGCATTGGTCAAAGCGCCGGGCGCAGAAGGCCTGTCCATTG AAAACGCCACCGGGATTTCTACCGACTGGCGTGGTTATACCGTAAAAACGCAGCTTAGCCCGTATGACGAAAACCGCGTG GCATTGAACAGCGACTATTTCTCCAAAGCCAATATTGAACTGGAAAACACCGTCATCAACCTGGTACCAACGCGCGGTGC GGTGGTGAAAGCCGAATTTGTCACCCATGTCGGTTATCGCGTGCTATTTAACGTCCGCCAGGTCAACGGTAAACCAATAA TGTTTGGCGCGATGGCAACCGCCTCTCTCGAAACGGGCACAGTCACCGGGATTGTCGGTGATAACGGCGAACTGTATCTC TCCGGGATGCCTGAAAAAGGCGAGTTTTTATTGAGTTGGGGACAAGCTGCGGATGAAAAATGTAAGGCGGCCTATCACAT CACCCATAAACCTGATGATACCAGCCTGGTTCAAATGGATGCGATTTGTCGCTAA Protein sequence : MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFERQEVKFAQD NPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSR WDQGINAMMMNYDFSASHTIRSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQSAVPQGAFALTDLNTTSSGG DLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAA LGIGKDMGALGAISFDVTHARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDF GKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYG SVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYL SGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 64 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CDCO157_4403 | YP_006315265.1 | putative outer membrane usher protein | VFG0454 | Protein | 1e-142 | 41 |
