Gene Information

Name : CDCO157_4318 (CDCO157_4318)
Accession : YP_006315183.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4544314 - 4544967 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTCAATTAATGACCATTGGCTCACAGCCAATATTTTTAATTATTGTATTTTTTCTGTTATCATTACTGCCAATATT
TGTTGTTATTGGTACTTCATTCCTGAAAATTTCTATTGTACTGGGGATATTGAAGAACGCATTAGGCATTCAACAGGTAC
CACCAAACATGGCGCTAACATCAGTGTCTTTGATACTGACAATGTTTATTATGTCTCCGATAATATTACAGATAAATGAT
AATATTTCTCAGGAACCAATCAATTATACCGACTCTGATTTTTTTCAAAAAGTTGATGAGAAAATATTATCACCATATCG
CGGTTTTTTAGAAAAAAATACAGAGAAAGACAATGTAGAGTTTTTTGAACGTGCAGCTCAAAAAAAATTGGGTAATGAAA
CTATCTTAAAAAAAGACTCTCTATTTATACTGTTACCGGCTTTCACGATGGGGCAGCTTGAAGCTGCATTCAAGATAGGT
TTTTTGCTCTATTTACCCTTTATTGCGATAGATTTGATCATTTCCAATATCTTATTGGCCTTGGGTATGATGATGGTATC
GCCAGTAACAATTTCGATTCCTTTTAAGATCTTATTATTCATTCTTGTTGGAGGCTGGCAAAAATTATTCGAATTTCTGT
TGGTGGTGAATTGA

Protein sequence : 
MSQLMTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQIND
NISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNETILKKDSLFILLPAFTMGQLEAAFKIG
FLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKLFEFLLVVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-84 100
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-84 100
escR AAC31528.1 L0049 Virulence LEE Protein 5e-84 100
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-84 100
escR CAC81847.1 EscR protein Virulence LEE II Protein 6e-84 99
escR CAI43889.1 EscR protein Virulence LEE Protein 6e-84 99
escR AAC38369.1 EscR Virulence LEE Protein 3e-83 99
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-83 99
escR AAK26700.1 EscR Virulence LEE Protein 6e-84 99
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-84 99
escR AAL57527.1 EscR Virulence LEE Protein 6e-84 99
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-84 99
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-79 92
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-73 82
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-73 82
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-44 53
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-44 53
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-44 53
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-44 53
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-44 53
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-46 53
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-44 50
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-33 46
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-33 46
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-34 46
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 7e-34 46
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 7e-34 46
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 5e-34 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-36 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-36 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-36 45
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-32 45
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-32 45
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-37 45
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 1e-35 45
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 2e-36 45
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-34 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-35 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-35 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-34 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 9e-36 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-34 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-34 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 8e-35 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG0827 Protein 3e-84 100
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG0715 Protein 1e-83 99
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG0519 Protein 1e-44 53
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG0188 Protein 3e-42 49
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG0044 Protein 1e-40 48
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG0394 Protein 1e-41 48
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG0551 Protein 2e-34 46
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG1773 Protein 2e-40 45
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG1012 Protein 6e-38 44
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG2455 Protein 3e-36 41
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG2338 Protein 7e-30 41
CDCO157_4318 YP_006315183.1 type III secretion system protein VFG2016 Protein 2e-30 41